| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,679,147 – 5,679,253 |
| Length | 106 |
| Max. P | 0.699006 |
| Location | 5,679,147 – 5,679,253 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -17.65 |
| Energy contribution | -17.76 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5679147 106 + 27905053 AACGCCCCCGAGAAGGCACCGAGAAAAGGUGACCAAAGUUAGCGGGAACUUAACUUUCCGGGCAACCCACUACCCACAGCUCACAGCCCACUGCCCACCGCCACC-C ...((((.......((((((.......)))).))((((((((.(....)))))))))..))))....................(((....)))............-. ( -23.20) >DroSim_CAF1 20674 89 + 1 AACGCCCCCGAGAAGGCA--AAAAAAAGGUGACCAAAGUUAGCGGGAACUUAACUUUCCGGGCAACCCACU--------------GCCCACUGCCCACCGCCACC-- ...(((........))).--.......((((...((((((((.(....)))))))))..(((((......)--------------))))......))))......-- ( -25.00) >DroEre_CAF1 17625 88 + 1 AACGCCCCCGAGAAGGC---A-AAAAAGGUGACCAAAGUUAGUAGGAACUUAACUUUCCG-GCAGCCCACU--------------GCCCACUGCCCACCACCAUCAA ...(((........)))---.-.....((((...(((((((((....)).)))))))..(-((((....))--------------))).......))))........ ( -21.50) >consensus AACGCCCCCGAGAAGGCA__AAAAAAAGGUGACCAAAGUUAGCGGGAACUUAACUUUCCGGGCAACCCACU______________GCCCACUGCCCACCGCCACC__ ...(((........)))..........((((...((((((((.......))))))))..(((((...........................)))))..))))..... (-17.65 = -17.76 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:55 2006