Locus 200

Sequence ID 3R_DroMel_CAF1
Location 861,352 – 861,472
Length 120
Max. P 0.693505
window347

overview

Window 7

Location 861,352 – 861,472
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -34.75
Consensus MFE -33.24
Energy contribution -33.73
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.96
SVM decision value 0.33
SVM RNA-class probability 0.693505
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 861352 120 + 27905053
UCCCCUCUCAUUAUUUAAACAAAACGGCGUCAUAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU
.((((((......(((....)))..((((.(((.((((((((((((((........((((...)))).......)))))))))).....))))..))).))))))))))........... ( -37.36)
>DroSec_CAF1 36129 120 + 1
UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU
.((((((......(((....)))..((((.((..((((((((((((((........((((...)))).......)))))))))).....))))...)).))))))))))........... ( -36.16)
>DroSim_CAF1 35309 120 + 1
UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGAGUCAGGAUGAUU
(((...(((....(((....))).(((((.((..((((((((((((((........((((...)))).......)))))))))).....))))...)).)))))..)))...)))..... ( -32.26)
>DroEre_CAF1 36000 120 + 1
UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAAUGGCCCCCACAAUCCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU
.((((((......(((....)))..((((.((..(((((((((((((.....(((...)))....((......))))))))))).....))))...)).))))))))))........... ( -33.20)
>consensus
UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU
.((((((......(((....)))..((((.((..((((((((((((((........((((...)))).......)))))))))).....))))...)).))))))))))........... (-33.24 = -33.73 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:11 2006