| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 190,266 – 190,360 |
| Length | 94 |
| Max. P | 0.830993 |
| Location | 190,266 – 190,360 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.35 |
| Mean single sequence MFE | -27.04 |
| Consensus MFE | -24.23 |
| Energy contribution | -23.65 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 190266 94 + 27905053 CUGAUAUCCU-----UUUU-UUUUUAGUUUGAGUCCGUCGUGAUGCUCCUCUGCUACGUAGGAUACUGCGUGGCCCUCCAUUUCAAUACGGAGCUGGAAC ..........-----....-......((((.(((((((..(((.........(((((((((....)))))))))........)))..))))).)).)))) ( -28.03) >DroPse_CAF1 26984 96 + 1 CUAAUCUUCG--AC--UUUCUCCACAGUUCGAGUCCGUGGUGAUGCUGCUCUGCUAUGUGGGAUACUGCGUGGCCCUCCACUUCAACACGGAGCUGGAGC ..........--..--..........((((.((((((((.(((.(.((....((((((..(....)..))))))....))).))).)))))).)).)))) ( -30.60) >DroGri_CAF1 24479 99 + 1 UUAAUAUCUU-UUGUUUCCAAUUAUAGGCUGAAUCUGUGGUGAUGUUGCUGUGUUAUGUGGGCUACUGCAUUGCCUUGCAUUUCAAUACGGAACUGGAGC ..........-....(((((((((((((.....))))))))...(((.(((((((((((((((.........))).)))))...))))))))))))))). ( -22.00) >DroEre_CAF1 26491 100 + 1 CUAAUCUUUCCUUCUUUCUUCUUUCAGUUUGAGUCCGUCGUGAUGCUGCUCUGCUACGUAGGAUACUGCGUGGCCCUCCACUUUAAUACGGAGCUGGAAC .....................(((((((.....(((((..(((.(.((....(((((((((....)))))))))....))).)))..)))))))))))). ( -26.50) >DroYak_CAF1 25373 100 + 1 CUAAUCUCUCUUUCUUUCUUCUUUCAGUUUGAGUCCGUCGUCAUGCUCCUCUGCUACGUAGGAUACUGCGUGGCCCUCCACUUUAAUACGGAGCUGGAAC .....................(((((((.....(((((..............(((((((((....))))))))).............)))))))))))). ( -24.53) >DroPer_CAF1 25172 96 + 1 CUAAUCUUCG--AC--UUUCUCCCCAGUUCGAGUCCGUGGUGAUGCUGCUCUGCUAUGUGGGAUACUGCGUGGCCCUCCACUUCAACACGGAGCUGGAGC ..........--..--..........((((.((((((((.(((.(.((....((((((..(....)..))))))....))).))).)))))).)).)))) ( -30.60) >consensus CUAAUCUCCC__UC_UUCUCUUUUCAGUUUGAGUCCGUCGUGAUGCUGCUCUGCUACGUAGGAUACUGCGUGGCCCUCCACUUCAAUACGGAGCUGGAAC ..........................((((.(((((((..(((.........(((((((((....)))))))))........)))..))))).)).)))) (-24.23 = -23.65 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:23 2006