Locus 1983

Sequence ID 3R_DroMel_CAF1
Location 5,614,053 – 5,614,148
Length 95
Max. P 0.744607
window3244

overview

Window 4

Location 5,614,053 – 5,614,148
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 97.54
Mean single sequence MFE -24.51
Consensus MFE -24.02
Energy contribution -23.84
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.98
SVM decision value 0.46
SVM RNA-class probability 0.744607
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5614053 95 + 27905053
CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUAAAAGUAGAACA
.......((((........(((((.....)))))..(((((.......((((((((.(....).)))))))))))))..........)))).... ( -25.11)
>DroSec_CAF1 11252 95 + 1
CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUAAAAGUAUAACA
..(((...(((........(((((.....)))))..(((((.......((((((((.(....).)))))))))))))..........)))..))) ( -25.01)
>DroEre_CAF1 10516 93 + 1
CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUA--AGUAGAACA
.......((((........(((((.....)))))..(((((.......((((((((.(....).))))))))))))).......--.)))).... ( -25.11)
>DroYak_CAF1 10584 93 + 1
CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUUCAGCAGUGCCGGACAAAUA--AGUAGAACA
.......((((........(((((.....)))))..(((((.......((((((((........))))))))))))).......--.)))).... ( -22.81)
>consensus
CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUA__AGUAGAACA
..(((...(((........(((((.....)))))..(((((.......((((((((........)))))))))))))..........)))..))) (-24.02 = -23.84 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:20 2006