| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,604,502 – 5,604,595 |
| Length | 93 |
| Max. P | 0.875456 |
| Location | 5,604,502 – 5,604,595 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.14 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -17.45 |
| Energy contribution | -16.53 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.875456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5604502 93 + 27905053 ACUAAAUGUGUCCUCUUCGCAUUUUA--ACGCGGUAAUCGCGUAUA-----------UUAAUGCAUAUUAAUGUAUGGAGUCGUCGG----AUGUCGGGGACUCGGUAAA ...(((((((.......)))))))..--(((((.....)))))(((-----------(((((....))))))))((.(((((.(((.----....))).))))).))... ( -25.90) >DroSec_CAF1 774 104 + 1 ACUAAAUAUGUCCUCUUCGCAUUUUA--ACGCGUUAAUCGCGUCUCAAAGCAACCCCUUCCUGCAUAUUAAUGUAUGAAGUCGUCGG----AUGUCGGGGACUCUGUAAA .........((((((...(((((...--(((((.....))))).......(.((..((((.(((((....))))).))))..)).))----)))).))))))........ ( -26.10) >DroSim_CAF1 163 104 + 1 ACUAAAUAUGUCCUCUUCGCAUUUUA--ACGCGUUAAUCGCGUCUCAAAGCAAUCGCUUCCUGCAUAUUAAUAUAUGGAGUCGUCGG----AUGUCGGGGACUCUGUAAA ....(((((((...............--(((((.....)))))....((((....))))...)))))))....(((((((((.(((.----....))).))))))))).. ( -27.80) >DroEre_CAF1 778 104 + 1 ACUAAA--UGUCCUCUUCGCCUCUUGGCACGCGUUAAUCGCGUCUCAAAGCAACACCAUUCGGUAUAUUAAUGUAAUGAGUCGCCGG----AAAUUGGGGACUCAGUAUA ((..((--((........(((....)))(((((.....))))).............))))..)).......((((.((((((.(((.----....))).)))))).)))) ( -29.00) >DroYak_CAF1 644 104 + 1 ACUAAA--UGUCCUCUUCGCCUUUUGGCACGCGUUAAUCGCGUCUCAAAGCAACACCAUUCGGCAUAUUAAUGUAAUGAGUCGCCGG----UUCUUGGGGACUCAGUAUA .....(--((((......(((....)))(((((.....)))))..................))))).....((((.((((((.(((.----....))).)))))).)))) ( -29.30) >DroAna_CAF1 645 107 + 1 ACUAAU--UGCCCACUUCUCAAUUAGGCACGCUUCGGGCGUGUCGCAAAA-AACAACCUUCAGCAUAUUAAUAUAAGUAGUCGCCCGGAAAAUGCGGGGGAAUGCGUAUA .(((((--((.........)))))))((((((.....))))))((((...-...........((.(((....))).))..((.((((.......)))).)).)))).... ( -26.30) >consensus ACUAAA__UGUCCUCUUCGCAUUUUA__ACGCGUUAAUCGCGUCUCAAAGCAACACCUUUCUGCAUAUUAAUGUAAGGAGUCGCCGG____AUGUCGGGGACUCAGUAAA ............................(((((.....))))).................................((((((.((((.......)))).))))))..... (-17.45 = -16.53 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:19 2006