| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,604,275 – 5,604,383 |
| Length | 108 |
| Max. P | 0.715890 |
| Location | 5,604,275 – 5,604,383 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.84 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -18.13 |
| Energy contribution | -17.93 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5604275 108 + 27905053 UGUUCCAUGCUACGGAGAUUCUUUGAUGGAACCG----AUCUAACUAUGAUAUACCAUCUCAUUUUCAGCCGUGCCUGCUCUAACCGCCACGGUCUGAUCCGCAAGUAUGGC ....(((((((.((((........(((((.....----(((.......)))...)))))......(((((((((...((.......))))))).))))))))..))))))). ( -32.80) >DroSec_CAF1 546 108 + 1 UGUUCCAUGCUACGGAGAUUCUCUAAUGGAACCG----AACUAAAUAUGAUAUACCGUCUCAUUUUCAGCCGUGCCUGCUCUAACCGCCACGGUCUGAUCCGCAAGUAUGGC .(((((((.....((((...)))).))))))).(----((...(((..(((.....)))..)))))).(((((((.(((((..((((...))))..))...))).))))))) ( -27.60) >DroEre_CAF1 552 107 + 1 UGUGCCAUGCUAUGGAGUUUCUUGUAUGAAACCG----AUGUAACUAUGAUAUACCAUCUUAUUUU-AGCCGUGCCUGCUCUAACCGCCACGGUCUGAUCCGCAAGUACGGC ((((.((((.(((.(.(((((......)))))).----)))....)))).))))............-.(((((((.(((((..((((...))))..))...))).))))))) ( -27.00) >DroYak_CAF1 417 107 + 1 UGUGCCAUGCUCUGGAGAUUCUCUGAUGGAACCG----AUGUAAUCAUAAUAUACCAUCUCAUUUU-AGCCGUGCCUGCUCUAACCGCCACGGUCUGAUCCGCAAGUACGGC ....(((.....))).........(((((.....----(((....)))......))))).......-.(((((((.(((((..((((...))))..))...))).))))))) ( -27.50) >DroAna_CAF1 419 104 + 1 UGUGCCAAUUUAUGCCAAUUGUGUGGUAGGACGU----AU----CAGUAAUCCAUAAUCUAUAUUUCAGCCGUGCCUGCUCUAACCGCCACGGUCUGAUCCGCAAGUACGGC .....(((((......)))))(((((....((..----..----..))...)))))............(((((((.(((((..((((...))))..))...))).))))))) ( -25.90) >DroPer_CAF1 429 105 + 1 UUUGCCAAAUCUCAAACAAUCUAUA---CAAGCAUAGAAUCUACUUAUGACUU---GUUUA-AUUCCAGCCGUGCCUGCUCUAACCGUCACGGUCUCAUCCGCAAGUACGGU .....................((.(---(((((((((.......))))).)))---)).))-......(((((((.(((....((((...)))).......))).))))))) ( -22.30) >consensus UGUGCCAUGCUACGGAGAUUCUCUGAUGGAACCG____AUCUAACUAUGAUAUACCAUCUCAUUUUCAGCCGUGCCUGCUCUAACCGCCACGGUCUGAUCCGCAAGUACGGC ....................................................................(((((((.(((((..((((...))))..))...))).))))))) (-18.13 = -17.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:18 2006