Locus 198

Sequence ID 3R_DroMel_CAF1
Location 859,281 – 859,401
Length 120
Max. P 0.835930
window342

overview

Window 2

Location 859,281 – 859,401
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.71
Mean single sequence MFE -42.85
Consensus MFE -31.17
Energy contribution -31.43
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.73
SVM decision value 0.73
SVM RNA-class probability 0.835930
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 859281 120 + 27905053
AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGGAAUAGGAUGUGAUGCAUGGGGCACUCAGGGGAGUGGGUUGUAUCAGCCCCGA
.(((......)))...(.((((....((((((((((.....)))))))))).((((((....)))))).........(((((((.....(((((....)))))...))))))))))).). ( -42.30)
>DroSec_CAF1 34080 118 + 1
AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGCAAGGGGAUGUGGUGCAGGGGGCG--AAGGGGAGGGCGUUGUACCAGCCCCGA
.....(.(..((((.((((((.(...((((((((((.....)))))))))).))))).))))))..))..((((...((((((((.(..(.--.......)..).)))))))).)))).. ( -44.30)
>DroSim_CAF1 33272 118 + 1
AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGCAAGGGGAUGUGGUGCAGGGGGCG--AAGGGGAGGGCGUUGUACCAGCCCCGA
.....(.(..((((.((((((.(...((((((((((.....)))))))))).))))).))))))..))..((((...((((((((.(..(.--.......)..).)))))))).)))).. ( -44.30)
>DroEre_CAF1 34325 103 + 1
AGAUAGCCAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGG------------GGAUGUGGGCAGGGGGGCG--AAGGGGACAAAGUUGU---AGCCCCGA
.....(((..(((..((((((.(...((((((((((.....)))))))))).))))).))------------.)))...))).((((.(((--(.(....)....))))---..)))).. ( -40.50)
>consensus
AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGCAAGGGGAUGUGGUGCAGGGGGCG__AAGGGGAGGGCGUUGUACCAGCCCCGA
.(((......))).(((((((.(...((((((((((.....)))))))))).))))).)))........................(((((.......................))))).. (-31.17 = -31.43 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:04 2006