Locus 1974

Sequence ID 3R_DroMel_CAF1
Location 5,574,693 – 5,574,810
Length 117
Max. P 0.535010
window3235

overview

Window 5

Location 5,574,693 – 5,574,810
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.40
Mean single sequence MFE -28.96
Consensus MFE -18.41
Energy contribution -18.60
Covariance contribution 0.20
Combinations/Pair 1.25
Mean z-score -1.44
Structure conservation index 0.64
SVM decision value 0.00
SVM RNA-class probability 0.535010
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5574693 117 - 27905053
CUAUAUAGAGUAAAUAUAAGCCACUUACUUAUGUUUUCCAUGUCGCUGUACAUCUCUGAGAGCGUCUUCUCGGGCUUAUCCACAGCAAUGGCCCGUUCGAAGGCGCGCAUUUUGACA
.....(((((.(((((((((.......)))))))))...((((......))))))))).(.((((((((.((((((.............))))))...)))))))).)......... ( -32.52)
>DroPse_CAF1 6767 117 - 1
CUACAUAAUACUAAUAGUGGCUACUUACUUAUGGUUUCCAUGUCCCUGUACAUCUCUGAGAGCGUUUUUUCGGGCUUGUCAACUGCAAUGGCCCGCUCGAAGGCACGCAUUUUCACA
........(((.....((((..(((.......)))..))))......)))......(((((((((.(((((((((..((((.......))))..))))))))).))))..))))).. ( -29.10)
>DroEre_CAF1 6010 117 - 1
CAACAGGGAGAACGUAUUAGCCACUUACUUAUGUUCUCCAUAUCCCUAUACAUCUCAGCGAGCGUCUUCUCUGGUUUAUCCACAGCAAUGGCCCGUUCAAAGGCGCGCAUUUUGACA
...(((((((((((((.............))))))))))..................((..(((((((...(((.....)))((....)).........)))))))))...)))... ( -26.52)
>DroYak_CAF1 6063 117 - 1
CAACAAGGAGUAAAUAUAAGCCACUCACUUAUGUUCUCCAUGUCACUAUACAUCUCAGAGAGCGUCUUCUCGGGCUUAUCCACAGCAAUGGCCCGUUCGAAGGCGCGCAUUUUUACA
..(((.((((..((((((((.......)))))))))))).)))................(.((((((((.((((((.............))))))...)))))))).)......... ( -35.22)
>DroAna_CAF1 9388 107 - 1
----------UUAGUAUAGUUUACCCACUUAUAUUCUCCAUGUCCCUGUACAUCUCUGAGAGCGUCUUCUCCGGCUUGUCCACUGCAAUUGCCCGCUCGAAGGCGCGCAUUUUUACG
----------...(((..................((((.((((......))))....))))((((((((.(.(((((((.....))))..))).)...)))))))).......))). ( -21.80)
>DroPer_CAF1 8709 117 - 1
CUACAUAAUACUAAUAGUGGCUACUUACUUAUGGUUUCCAUGUCCCUGUACAUCUCUGAGAGUGUUUUUUCGGGCUUGUCAACUGCAAUGGCCCGCUCGAAGGCACGCAUUUUCACA
........(((.....((((..(((.......)))..))))......)))......(((((((((.(((((((((..((((.......))))..)))))))))...))))))))).. ( -28.60)
>consensus
CUACAUAGAGUAAAUAUAAGCCACUUACUUAUGUUCUCCAUGUCCCUGUACAUCUCUGAGAGCGUCUUCUCGGGCUUAUCCACAGCAAUGGCCCGCUCGAAGGCGCGCAUUUUCACA
...................((.............((((.((((......))))....))))((((((((.((((((.............))))))...))))))))))......... (-18.41 = -18.60 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:11 2006