Locus 1973

Sequence ID 3R_DroMel_CAF1
Location 5,570,070 – 5,570,165
Length 95
Max. P 0.614274
window3234

overview

Window 4

Location 5,570,070 – 5,570,165
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 74.74
Mean single sequence MFE -26.60
Consensus MFE -18.05
Energy contribution -18.50
Covariance contribution 0.45
Combinations/Pair 1.06
Mean z-score -1.33
Structure conservation index 0.68
SVM decision value 0.16
SVM RNA-class probability 0.614274
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5570070 95 - 27905053
GGGGCACUCAGCCCAAAAGGUCCUCCUCCGCCUCCACCACCGCCAUUGGGAGCAUUUCUGCCUCCGGGACCACCACUACCUCCAGGGCCAUUUCU
.((((.....))))....((((((.......................((..(((....)))..))((.....)).........))))))...... ( -26.30)
>DroSec_CAF1 1338 95 - 1
GGGGCACUCAGGCCAAACGGUCCUCCCCCGCCUCCACCACCGCCAUUGGGAGCCCGUCUGCCACCGGGACCACCACUUCCUCCAGGGCCAUCUCU
..(((.....(((...((((..(((((..((..........))....))))).))))..))).((.(((...........))).)))))...... ( -27.00)
>DroYak_CAF1 1440 74 - 1
GGGGCCCUUAGGCCCAACGGUCCU---CCGCCUCCACCCCCGCCAUCGGGAGACCCUCUGCCUCCGGGACCACCU------------------CU
(((((((..((((.....((((..---(((....(......)....)))..))))....))))..))).)).)).------------------.. ( -26.50)
>consensus
GGGGCACUCAGGCCAAACGGUCCUCC_CCGCCUCCACCACCGCCAUUGGGAGCCCCUCUGCCUCCGGGACCACCACU_CCUCCAGGGCCAU_UCU
(((((......)))....(((((......((..........))...(((..((......))..)))))))).))..................... (-18.05 = -18.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:10 2006