Locus 1971

Sequence ID 3R_DroMel_CAF1
Location 5,560,923 – 5,561,027
Length 104
Max. P 0.694989
window3232

overview

Window 2

Location 5,560,923 – 5,561,027
Length 104
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.79
Mean single sequence MFE -33.01
Consensus MFE -17.36
Energy contribution -19.20
Covariance contribution 1.84
Combinations/Pair 1.36
Mean z-score -1.83
Structure conservation index 0.53
SVM decision value 0.34
SVM RNA-class probability 0.694989
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5560923 104 - 27905053
ACUGCAACAUCACCGGUGCGAGGCCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGCAGGGUCAAUG----UCGGUGGUCACAAUCC--GGCGCAGCCGCUCCAU
.((((.......((((((.((((....)))))))((.(((((.(((((((((.((....)).)))))))..)----).)))))..))....)--)).))))......... ( -37.60)
>DroPse_CAF1 280 98 - 1
AUUGCAACAUAAGCGGAAUUAGACCAACAUCAACGUUUCAUCAACUUUCUUUUCCACAAUCAAGAGUGCAU----------AGCCAUAACCA--UUCACAAUCAUUGCUU
...((((.....(.((((..(((........................))).)))).)......(((((..(----------(....))..))--))).......)))).. (  -9.46)
>DroSim_CAF1 281 104 - 1
ACUGCAACAUCACCGGAGCGAGGCCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGCAGGGUCAAUG----UCGGUGGCCACAAUCC--GGCGCAGCCGAUCCAU
.((((.....(((((((((((((....))))...)))))..((..(((((((.((....)).))))))).))----..))))(((.......--)))))))......... ( -40.30)
>DroEre_CAF1 454 104 - 1
AUUGCAACAUCACCGGAGCGAGACCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGAAGGGUCAAUG----UCGGUGGCCACAAUCC--GGCGCAGCCACUGCAU
............((((((.(((......))))..((.(((((.((((((((((((....))))))))))..)----).)))))..))..)))--)).((((...)))).. ( -41.00)
>DroYak_CAF1 281 104 - 1
ACUGCAACAUCACCGGAGCGAGACCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGAAGGGUCAAUG----UCGGUGGCCACAAUCC--GGUGCAGCCAAUGCAU
..((((....((((((((.(((......))))..((.(((((.((((((((((((....))))))))))..)----).)))))..))..)))--)))).......)))). ( -43.50)
>DroAna_CAF1 519 110 - 1
GUUGCACCAUGACCGGAACAAGACCCACCUCUACGUUCCACCAGUUGUCCUUCCCCCAGGGCAGAGUCAAUGGCCAUCAGCCGCCGCCACCCCAGCCCCUGCCCCUGCAU
..(((((((((((.(((((.(((......)))..))))).....(((((((......))))))).))).))))....(((..((.(......).))..)))....)))). ( -26.20)
>consensus
ACUGCAACAUCACCGGAGCGAGACCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGAAGGGUCAAUG____UCGGUGGCCACAAUCC__GGCGCAGCCACUGCAU
.((((.....((((((((((((......)))...)))))......(((((((.((....)).))))))).........))))(((.........)))))))......... (-17.36 = -19.20 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:08 2006