Locus 1967

Sequence ID 3R_DroMel_CAF1
Location 5,554,026 – 5,554,118
Length 92
Max. P 0.734829
window3228

overview

Window 8

Location 5,554,026 – 5,554,118
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 82.87
Mean single sequence MFE -13.85
Consensus MFE -10.19
Energy contribution -10.58
Covariance contribution 0.39
Combinations/Pair 1.13
Mean z-score -2.01
Structure conservation index 0.74
SVM decision value 0.43
SVM RNA-class probability 0.734829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5554026 92 + 27905053
UACAUAAUUUACUUACCCUGUUGCACAUCAAGACCUGCUCUUUCAAGCAUAUAGGGUAAUCCUAUAUCCAAAA---ACCAUUAUUAUUUUUAUAC-
............((((((((((((.....((((.....))))....))).)))))))))..............---...................- ( -14.70)
>DroSec_CAF1 2268 87 + 1
UACAUAGUUUACUUACCCUGUUGCACAUCAAGACCGGCUCUUUCAAGCAUAUAGGGUAAUCCUAUAUUCAA-A---ACCAUUAUUAUUU----AU-
...((((.....((((((((((((.....((((.....))))....))).)))))))))..))))......-.---.............----..- ( -15.10)
>DroSim_CAF1 2728 87 + 1
UACAUAGUUUACUUACCCUGUUGCACAUCAAGACCGGCUCUUUCAAGCAUAUAGGGUAAUCCUAUAUUCAA-A---ACCAUUAUUAUUU----AU-
...((((.....((((((((((((.....((((.....))))....))).)))))))))..))))......-.---.............----..- ( -15.10)
>DroEre_CAF1 2806 87 + 1
UACAUAGUUUACUUACCCUGUUGCACAUCAAGCCCGGCUCUUUCCAGCAUAUAGGGUAAACCUAAAGGCAA-A---AAAAUUAUUAUUU----AU-
...(((((((..((((((((((((......(((...))).......))).))))))))).((....))...-.---.))))))).....----..- ( -16.62)
>DroYak_CAF1 2962 87 + 1
UACAUAGUUUACUUACCCUGUUGCACAUCAAGCCCGGCUCUUUCAAGCAUGUAGGGUAAUCCUAAAGCCAA-U---ACAAUUAUUAUUU----AU-
............((((((((..((.......))...(((......)))...))))))))............-.---.............----..- ( -11.80)
>DroPer_CAF1 8120 92 + 1
CACAUCCUACACUCACCUUGUUGUACAUCAAGCCCAGCUCUCUCUAGCAUAUAUGGCAAGCCUAAAAAUAAAGUACAAAAUUAGUAUAA----AUC
....................((((((..........(((......)))......((....))..........))))))...........----... (  -9.80)
>consensus
UACAUAGUUUACUUACCCUGUUGCACAUCAAGACCGGCUCUUUCAAGCAUAUAGGGUAAUCCUAAAUCCAA_A___ACAAUUAUUAUUU____AU_
............((((((((((((.....(((.......)))....))).)))))))))..................................... (-10.19 = -10.58 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:04 2006