| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,539,788 – 5,539,906 |
| Length | 118 |
| Max. P | 0.537519 |
| Location | 5,539,788 – 5,539,906 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.20 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -17.97 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5539788 118 - 27905053 GACUACUUCCCCU-UAUCAGCGACACAAAAAAAUAUAAAUAAUAAACAGGCAAUGCGAUUAUUCAAUGAUCACUGGGAACUUCUCCACUUCCUCGCAUUGCUUGUUGAAACUGGUGACG ............(-((((((.............(((.....)))((((((((((((((((((...))))))....(((.....)))........))))))))))))....))))))).. ( -27.50) >DroEre_CAF1 19226 117 - 1 GACUACUUCCCCU-UAUCUG-AACACAAAAAAAUUAAACUUAUAAACAGGCAAUGCGAUUAUUCAAUGAUCACUGGGAACUUUUCCACUUCCUCACAUUGCUCGUUGAAACUGGAAAUG ......((((.(.-.....)-.......................(((..((((((.((((((...))))))..(((((....)))))........))))))..)))......))))... ( -17.50) >DroYak_CAF1 19183 118 - 1 GACUACUUCCCCCACAAGAC-AAAACAAAAAAAUGAUAAUAAUAAACAGGCAAUGCGAUUAUUCAAUGAUCACUGGGAACUUUUCUACUUCCUCACAUUGCUUGUUAAAACUGGUGACA ............(((.((..-....((......)).........(((((((((((.((((((...))))))...(((((.........)))))..)))))))))))....)).)))... ( -21.60) >consensus GACUACUUCCCCU_UAUCAG_AACACAAAAAAAUAAAAAUAAUAAACAGGCAAUGCGAUUAUUCAAUGAUCACUGGGAACUUUUCCACUUCCUCACAUUGCUUGUUGAAACUGGUGACG ............................................(((((((((((.((((((...))))))...(((((.........)))))..)))))))))))............. (-17.97 = -18.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:57 2006