Locus 1961

Sequence ID 3R_DroMel_CAF1
Location 5,534,516 – 5,534,629
Length 113
Max. P 0.581455
window3218

overview

Window 8

Location 5,534,516 – 5,534,629
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 91.15
Mean single sequence MFE -31.15
Consensus MFE -26.49
Energy contribution -27.93
Covariance contribution 1.44
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.581455
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5534516 113 - 27905053
CAAUCUCGCCAAUGCGUCUCACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGAAUCCUCAUCCU
...((((((...((((.((.......)).))))......((..((((.(((((.....)))..))...((((((....))))))))))..))....))))))........... ( -37.10)
>DroSec_CAF1 15379 101 - 1
CAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGC------------AGCCGCAGCAACAGCGGGAAUCCUCAUCCU
...((((((...((((.(.........).))))......((..((((.((.((.....)))).((....))------------.))))..))....))))))........... ( -26.10)
>DroSim_CAF1 13906 113 - 1
CAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGAAUCCUCAUCCU
...((((((...((((.(.........).))))......((..((((.(((((.....)))..))...((((((....))))))))))..))....))))))........... ( -35.40)
>DroYak_CAF1 13738 113 - 1
CAAUCUCGCCAAUGCAUCCCACAACCAGUCGCAGUCCCAGCACCGUCAGCCUGUCCAUCAGCAGCAGAUGCAGCUUCAGCUGCAGCCGCAGCAACAUCGGGAAUCCUCAUCCU
.......((....)).((((..........(((((...(((..((((.((.(((......))))).))))..)))...))))).((....))......))))........... ( -26.00)
>consensus
CAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGAAUCCUCAUCCU
...((((((...((((.(.........).))))......((..((((.((.(((......)))))...((((((....))))))))))..))....))))))........... (-26.49 = -27.93 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:54 2006