| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,524,565 – 5,524,655 |
| Length | 90 |
| Max. P | 0.613509 |
| Location | 5,524,565 – 5,524,655 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -44.85 |
| Consensus MFE | -31.80 |
| Energy contribution | -31.11 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5524565 90 + 27905053 -UGCUGCUGGUGGGCAGUGGCUCUCGUCGGACUCUCCGCCGGAGGAGCUGGCGAGGAGACGCCUCCACCCGUCGCCUGGCGACUGGGCGAC -.......((((((..(((.((((((((((..(((((...)))))..))))))).))).))).)))))).((((((..(...)..)))))) ( -44.30) >DroPse_CAF1 5522 82 + 1 CAGCUGCUGGUGGGCGGUGGCCCGGGUGGGGCUCUCCGCUGGCGGUGCUGGCGACGAGACGGC--CU-------UUUGUCGUGUCGGCGAA ((((.((((.(.(((((.(((((.....)))))..))))).))))))))).((.(((.(((((--..-------...))))).))).)).. ( -41.10) >DroSec_CAF1 5603 90 + 1 -UGCUGCUGGUGGGCAGUGGCCCUCGUUGGACUCUCCGCCGGAGGAGCUGGCGAGGAGACGCCUCCAGCCGUCGCCUGGCGACUGGGCGAC -....(((((.((((.((...((((((..(..(((((...)))))..)..))))))..))))))))))).((((((..(...)..)))))) ( -47.70) >DroSim_CAF1 3584 90 + 1 -UGCUGCUGGUGGGCAGUGGCCCUCGUUGGACUCUCCGCCGGAGGAGCUGGAGAGGAGACGCCUCCACUUGUCGCCUGGCGACUGGGCGAC -.((((((....))))))((((((((.(((.....))).).)))).)))((((.(....)..))))....((((((..(...)..)))))) ( -40.10) >DroYak_CAF1 3648 90 + 1 -UGCUGCUGGUGGGCGGUGGCCCUCGUUGGACUCUCCGCCGGAGGAGCUGGCGAGGAGACGCCACCGCUCGUCGCCUGGCGACUGGGCGAC -..........((((((((((((((((..(..(((((...)))))..)..))))))....))))))))))((((((..(...)..)))))) ( -53.50) >DroPer_CAF1 5501 82 + 1 CAGCUGCUGGUGGGCGGUGGCCCGGGUGGGGCUCUCCGCUGGCGGUGCCGGCGACGAGACGGC--CU-------UUUGUCGUGUCGGCGAA ..(((((..(((((....(((((.....))))).)))))..)))))(((((((((((((....--.)-------))))))))..))))... ( -42.40) >consensus _UGCUGCUGGUGGGCAGUGGCCCUCGUUGGACUCUCCGCCGGAGGAGCUGGCGAGGAGACGCCUCCAC_CGUCGCCUGGCGACUGGGCGAC ..((((((....)))))).((((........(((..((((((.....))))))..))).((((..............))))...))))... (-31.80 = -31.11 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:49 2006