Locus 1955

Sequence ID 3R_DroMel_CAF1
Location 5,519,912 – 5,520,030
Length 118
Max. P 0.875604
window3211

overview

Window 1

Location 5,519,912 – 5,520,030
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.63
Mean single sequence MFE -33.05
Consensus MFE -23.95
Energy contribution -23.07
Covariance contribution -0.88
Combinations/Pair 1.31
Mean z-score -2.01
Structure conservation index 0.72
SVM decision value 0.89
SVM RNA-class probability 0.875604
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5519912 118 - 27905053
GAAUUUACUCUUUGUCGAGCCGACAACGGCUAAAGUCUGUCGACAUGCAGGAAUGUUUGUGGAGUA--UUAGCUUACUAUAUAUUGGCUAAACUGGCUUUAAACAUUGUCGAAUCGAUAA
...........(((((((..((((((.(..(((((((..((.(((.(((....))).))).))((.--((((((...........)))))))).)))))))..).))))))..))))))) ( -35.60)
>DroSim_CAF1 6773 118 - 1
GAAUUUACUCUUUGUCGAGCCGACAACGGCUAAUGUCUGUCGACGUGCAGGAAUGUUUAUGGAGUA--UUAGCUUACUAUAUAUUGGCUAAACUGGCUUUAAGCAUUGUCGAAUCGACAA
...........(((((((..((((((.(((((((((((((.(((((......))))).))))).))--))))))...........((((.....)))).......))))))..))))))) ( -35.10)
>DroEre_CAF1 6800 120 - 1
GAAUUUACUCUUUGUCGAGCCGACAAGUGUUAAAGUCUUUCGGCAUACAGGAAUGUUUAUGGAGUUACGGAGCUUACCAAAUAUUGGCCUAACUGACUUUAAGCUUUGUCGCAUCGGCGA
...........(((((((..(((((((..((((((((....(((.......(((((((...(((((....)))))...))))))).))).....))))))))..)))))))..))))))) ( -33.50)
>DroYak_CAF1 6811 115 - 1
GAAUAUACUCUUCGUCGAGCCGACAACGGCUAAAGUCUUUCUGCAUACAGGAAUGUUUAUGGAGUA--UAAGCUUACUAAAUAUCAGGCAAACUGACUUUG---CUUGUUGAAUCAGAGA
.......((((...((((((((....))))(((((((((((((....))))))((((((((.((((--......))))...))).)))))....)))))))---....))))...)))). ( -28.00)
>consensus
GAAUUUACUCUUUGUCGAGCCGACAACGGCUAAAGUCUGUCGACAUACAGGAAUGUUUAUGGAGUA__UUAGCUUACUAAAUAUUGGCCAAACUGACUUUAAGCAUUGUCGAAUCGACAA
...........(((((((..((((((....(((((((....(((((......)))))....((((......))))...................)))))))....))))))..))))))) (-23.95 = -23.07 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:47 2006