| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,505,275 – 5,505,370 |
| Length | 95 |
| Max. P | 0.726942 |
| Location | 5,505,275 – 5,505,370 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.69 |
| Mean single sequence MFE | -15.50 |
| Consensus MFE | -13.49 |
| Energy contribution | -12.88 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5505275 95 + 27905053 --C---AAC---CAGAG--GA-AAGCUACAACCAAUUUAUUGCAAA-AAUCAGUUUGCAGUUUAUUA-UUU-UUGUUUCCUGUAAAUAAAGGAAAUUAACAAUAAA--AAA --.---...---.....--..-...........(((..((((((((-......))))))))..))).-...-..(((((((........)))))))..........--... ( -14.30) >DroVir_CAF1 905 105 + 1 AACAACAAC---AAAUGGAAA-AAGCUACAACCAAUUCAUUGCGAA-GUUACAUUUGCAAUUUAUUAACUUUUUGUUUCCUGUAAAUAAAGGGAAUUAA-AAUAAACUAAA .........---...(((...-...........(((..((((((((-......))))))))..)))...((((.(((((((........))))))).))-))....))).. ( -15.60) >DroPse_CAF1 1018 98 + 1 --C---AACAAGCAGAG--GA-AAGCUACAACCAAUUCAUUGCAAAAAAUGUGUUUGCAGUUUAUUA-UUUUUUGUUUCCUGUAAAUAAAGGAAAUU-ACAAUAAA---UA --.---....(((....--..-..)))...........((((((((.......))))))))...(((-((....(((((((........))))))).-..))))).---.. ( -15.80) >DroGri_CAF1 977 100 + 1 AAC---AGC---AACUGGACA-AAGCUACAACCAAUUCAUUGCGAA-GUUUCAUUUGCAAUUUAUUAAUUUUUUGUUUCCUGUAAAUAAAGGAAAUUAA-AAUAAA--AAA ...---(((---.........-..)))......(((..((((((((-......))))))))..))).(((((..(((((((........))))))).))-)))...--... ( -16.70) >DroAna_CAF1 977 89 + 1 --------C---CAGAG--GAAAAGCUACAACCAAUUUAUUGCAAA---GUGGUUUGCAAUUUAUUA-UUU-UUGUUUCCUGUAAAUAAAGGAAAUU-ACAAUAAA---AC --------.---.....--.....((...(((((.(((.....)))---.))))).))......(((-((.-..(((((((........))))))).-..))))).---.. ( -14.80) >DroPer_CAF1 1006 98 + 1 --C---AACAAGCAGAG--GA-AAGCUACAACCAAUUCAUUGCAAAAAAUGUGUUUGCAGUUUAUUA-UUUUUUGUUUCCUGUAAAUAAAGGAAAUU-ACAAUAAA---UA --.---....(((....--..-..)))...........((((((((.......))))))))...(((-((....(((((((........))))))).-..))))).---.. ( -15.80) >consensus __C___AAC___CAGAG__GA_AAGCUACAACCAAUUCAUUGCAAA_AAUGCGUUUGCAAUUUAUUA_UUUUUUGUUUCCUGUAAAUAAAGGAAAUU_ACAAUAAA___AA .................................(((..((((((((.......))))))))..)))........(((((((........)))))))............... (-13.49 = -12.88 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:44 2006