| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 855,544 – 855,652 |
| Length | 108 |
| Max. P | 0.827517 |
| Location | 855,544 – 855,652 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.84 |
| Mean single sequence MFE | -24.71 |
| Consensus MFE | -15.51 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 855544 108 + 27905053 ---------CCCCAUUUUGAUCGUAAUACUUGAAAAUGCUUAACUGAUCGAAUUGACCUCGGUUAAUGAUUGCCAGACUUAUAGUCUGGCAAACCCCAGUAACAAAAGUACCCUUUC--- ---------.....(((((.(((.......))).........((((.....((((((....))))))..(((((((((.....)))))))))....))))..)))))..........--- ( -25.20) >DroSim_CAF1 29511 108 + 1 ---------CCCCAUUCCGAUCAUAAUACUUUAAAAAGCUUAAGUGCUCAAAUUGACCUCGGUUAAUGAUUGCCAGACUCAUAGUCUGGCAAACCUCGGUUGCAAAAGUACCCCUUC--- ---------.................((((((....(((......)))......((((..((((......((((((((.....))))))))))))..))))...)))))).......--- ( -26.10) >DroEre_CAF1 30701 120 + 1 GCUUUUAACUGGCAUUCUGAUCAUAUUACUUGAAAUUGGUUAGCUGAUGAAAUUGACUUCGAUAGAUGAUUGCCGGACUUAAGGUGCUACAACACUCAGCUGCAAAAGUACCCUGUCUGU ..........((((..(((((((.............)))))))(((.((((......)))).))).....))))((((....((((((....((......))....))))))..)))).. ( -22.82) >consensus _________CCCCAUUCUGAUCAUAAUACUUGAAAAUGCUUAACUGAUCAAAUUGACCUCGGUUAAUGAUUGCCAGACUUAUAGUCUGGCAAACCUCAGUUGCAAAAGUACCCUUUC___ ..........................(((((.........((((((.....((((((....))))))..(((((((((.....)))))))))....))))))...))))).......... (-15.51 = -16.30 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:59 2006