Locus 1946

Sequence ID 3R_DroMel_CAF1
Location 5,495,194 – 5,495,314
Length 120
Max. P 0.509331
window3200

overview

Window 0

Location 5,495,194 – 5,495,314
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.89
Mean single sequence MFE -45.54
Consensus MFE -36.17
Energy contribution -35.92
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -2.28
Structure conservation index 0.79
SVM decision value -0.05
SVM RNA-class probability 0.509331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5495194 120 - 27905053
CACGGGCAUUGCGAAGGGCGUGGCGCAGUGGAGCAGCGGCAAAGAUCCGCCGGUGCGUACCGCCCCACUGAAUAGCUUCGCAAUGUUCUCCAAAAUCUUGUCUUACCAACCGCAGCAAGU
...(((((((((((((..(((((.((.(((..(((.((((........)))).))).))).)).)))).).....)))))))))))))........(((((.............))))). ( -44.32)
>DroVir_CAF1 36165 120 - 1
CACGGGCAUUGCGAAGGGUGUGGCGCAAUGGACUAGCGGCAAGGAUCCGCCGGUUCGUACCACACCGCUAAAUAGCUUCGCAAUGUUCACAAAAAUCUUGUCUUACCAACCGCAGCAAGU
...((((((((((((.(((((((....((((((..((((.......))))..)))))).)))))))(((....)))))))))))))))........(((((.............))))). ( -47.12)
>DroGri_CAF1 30626 120 - 1
CACGGGCAUUGCGAAGGGUGUGGCGCAGUGGACUAGCGGCAAGGAUCCGCCGGUUCGUACCACACCGCUAAAUAGCUUCGCAAUGUUCUCAAAAAUCUUGUCUUACCAACCGCAGCAAGU
...((((((((((((.(((((((..(...((((..((((.......))))..)))))..)))))))(((....)))))))))))))))........(((((.............))))). ( -46.52)
>DroWil_CAF1 30255 120 - 1
CACGGGCAUUGCGAAGGGCGUGGCUCAGUGGAGCAGCGGCAAAGAACCGCCGGUGCGUACCGCCCCACUCAAUAGCUUCGCAAUGUUCUCCAAAAUCUUGUCUUACCAACCGCAGCAAGU
...(((((((((((((.(.((((....((((.(((.((((........)))).)))...)))).)))).).....)))))))))))))........(((((.............))))). ( -43.62)
>DroMoj_CAF1 36218 120 - 1
CACGGGCAUUGCGAAGGGUGUGGCGCAGUGGACCAGCGGCAAGGAUCCGCCGGUUCGUACCACACCGUUAAAUAGCUUCGCAAUGUUCUCAAAAAUCUUGUCUUACCAACCGCAGCAAGU
...((((((((((((((((((((..(...(((((.((((.......)))).))))))..))))))).........)))))))))))))........(((((.............))))). ( -45.82)
>DroAna_CAF1 28837 120 - 1
CACGGGCAUUGCGAAGGGCGUGGCGCAGUGGAGCAGCGGCAAAGAUCCGCCGGUGCGUACAGGGCCACUGAAUAGCUUCGCAAUGUUCUCCAAAAUCUUGUCUUACCAACCGCAGCAAGU
...(((((((((((((..((((((.(.(((..(((.((((........)))).))).))).).))))).).....)))))))))))))........(((((.............))))). ( -45.82)
>consensus
CACGGGCAUUGCGAAGGGCGUGGCGCAGUGGACCAGCGGCAAAGAUCCGCCGGUGCGUACCACACCACUAAAUAGCUUCGCAAUGUUCUCAAAAAUCUUGUCUUACCAACCGCAGCAAGU
...((((((((((((((((((((..(.(.....)..((((........))))....)..))))))).((....)))))))))))))))........(((((.............))))). (-36.17 = -35.92 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:35 2006