| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,485,177 – 5,485,286 |
| Length | 109 |
| Max. P | 0.754341 |
| Location | 5,485,177 – 5,485,286 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.18 |
| Mean single sequence MFE | -34.18 |
| Consensus MFE | -30.62 |
| Energy contribution | -30.46 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5485177 109 - 27905053 AUUUCAUGCGCGACGCCCCCGAGCCAACUGGCGAGGAGGGCGAGGACACCGACAUGGAGCUACCCAAGGUAGGUCAACUUUAUCUCUGUAUCUGUAUU--------GUUUAAAGUU---U ....(((((....(((((((..(((....)))..)).))))).((...))).))))((.(((((...))))).))(((((((...(.(((....))).--------)..)))))))---. ( -35.10) >DroSec_CAF1 16066 98 - 1 AUUUCAUGCGCGACGCCCCCGAGCCAACUGGCGAGGAGGGCGAGGACACCGACAUGGAGCUACCCAAGGUAGGUCAACUUUAUUUC---AUAUGUAUG---------UUU---------- ....((((((...(((((((..(((....)))..)).)))))..(((.((.....))..(((((...))))))))...........---...))))))---------...---------- ( -33.40) >DroSim_CAF1 18247 99 - 1 AUUUCAUGCGCGACGCCCCCGAGCCAACUGGCGAGGAGGGCGAGGACACCGACAUGGAGCUACCCAAGGUAGGUCAAGUUUACUUC---AUAUUUAUU--------GCUU---------- .........((((.((((((..(((....)))..)).))))((((.....(((...((.(((((...))))).))..)))..))))---.......))--------))..---------- ( -33.30) >DroEre_CAF1 15945 117 - 1 AUUUCAUGCGCGACGCCCCCGAGCCGACUGGCGAGGAGGGCGAGGACACCGACAUGGAGCUGCCCAAGGUAGGUCUACUUAAUCCC---AUAAGUAUUACCAUGUUCAUUAAAGUUAGCU .........((..(((((((..(((....)))..)).)))))........(((((((..(((((...)))))...((((((.....---.))))))...)))))))...........)). ( -38.50) >DroYak_CAF1 14448 97 - 1 AUUUCAUGCGCGACGCCCCCGAGCCAACUGGCGAGGAGGGCGAGGACACCGACAUGGAGCUACCCAAGGUAGGCAUAGUUUAU------------AUAACCAUACAACU----------- .((((((((....(((((((..(((....)))..)).))))).((...))).)))))))(((((...)))))...........------------..............----------- ( -30.60) >consensus AUUUCAUGCGCGACGCCCCCGAGCCAACUGGCGAGGAGGGCGAGGACACCGACAUGGAGCUACCCAAGGUAGGUCAACUUUAUCUC___AUAUGUAUU________GCUU__________ .((((((((....(((((((..(((....)))..)).))))).((...))).)))))))(((((...)))))................................................ (-30.62 = -30.46 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:30 2006