Locus 1938

Sequence ID	3R_DroMel_CAF1
Location	5,474,534 – 5,474,628
Length	94
Max. P	0.592407

overview

Window 6

Location	5,474,534 – 5,474,628
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	89.79
Mean single sequence MFE	-26.96
Consensus MFE	-19.78
Energy contribution	-20.70
Covariance contribution	0.92
Combinations/Pair	1.08
Mean z-score	-1.73
Structure conservation index	0.73
SVM decision value	0.12
SVM RNA-class probability	0.592407
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5474534 94 - 27905053
ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUCUCCCUUAUCCCCAUGGAUUUUCCAUGUACUUUUCCCGGCAAAGGGAAAGCUAAACUAGAU
..........((((((((((((((((...((....)))))).)))))).....))))))....(((((((......)))))))........... ( -25.70)
>DroSec_CAF1 5373 94 - 1
ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUUUCCCUUAUCCCCAUGGGUUUCCCAUGUACUUUUCCCGGCAAAGGGAAAGCUAAACUAGAU
...............(((.(((....)))(((((((((((...((((((((...))))))..........))..)))))))))))..))).... ( -26.70)
>DroSim_CAF1 5487 94 - 1
ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUUUCCCUUAUCCCCAUGGGUUUGCCAUGUACUGUUCCCGGCAAAGGGAAAGCUAAACUAGAU
...............(((.(((....)))(((((((((((..(((...)))..((((.............)))))))))))))))..))).... ( -26.62)
>DroEre_CAF1 5278 94 - 1
ACAAAUUGCAAUGGAAGUGGGGCUAACCCACUUUUUCCUUAUCCCCAUGGGUUUCCCAUGCACUUUUCCCGGCAAAGGGAAAGCCAAACUAGAU
.......((...(((((((((.....))))))...))).......((((((...))))))....((((((......)))))))).......... ( -28.60)
>DroYak_CAF1 3651 93 - 1
ACAAAUUGCAAGGGAAGUGGGGUAAACACGGUUUUCCCCUUUCCCCCUGGGUUUUC-UUGUACUUUUUCCGGCAAGGGGAAAGCUAAACUAGAU
......((((((..((..((((.((((...)))).))))...(((...)))))..)-)))))((((..((.....))..))))........... ( -27.20)
>consensus
ACAAAUUGAAAUGGAAGUGGGGUAAGCCCGGUUUUCCCUUAUCCCCAUGGGUUUCCCAUGUACUUUUCCCGGCAAAGGGAAAGCUAAACUAGAU
...............(((.(((....)))(((((((((((...(((((((.....)))))..........))..)))))))))))..))).... (-19.78 = -20.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:20 2006