Locus 1937

Sequence ID 3R_DroMel_CAF1
Location 5,473,994 – 5,474,085
Length 91
Max. P 0.607493
window3185

overview

Window 5

Location 5,473,994 – 5,474,085
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 84.80
Mean single sequence MFE -22.86
Consensus MFE -16.24
Energy contribution -15.88
Covariance contribution -0.36
Combinations/Pair 1.27
Mean z-score -1.71
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.607493
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5473994 91 - 27905053
GGGGAUUCAAUGUCUAACUCGUAAGUUCGGGUGACAUUGCAUUUUUCCCUUUAUAUUUUUGGCCAUGUGAAAGUCUAUUUUCAUCUGCUGG
(((((..(((((((..(((((......)))))))))))).....))))).........(..((...(((((((....)))))))..))..) ( -25.30)
>DroSec_CAF1 4840 91 - 1
GGGGAUUCAAUGUCCAACUCGUAAGUUUGGGUGACAUUGCAUUUUUGCCUUUUUAUUUUUGGCAAUGUGAAAGUCUAUUUUCCUCUGCUGG
(((((..(((((((..(((((......))))))))))))(((..(((((...........))))).)))...........)))))...... ( -24.30)
>DroSim_CAF1 4942 91 - 1
GGGGAUUCAAUGUCUAGCUCGUAAGUUCGGGUGACAUUGCAUUUUUCCCUUUUCAUUUUUGGCCAUGUGAAAGUCUAUUUUCCUCUGCUGG
(((((..(((((((..(((((......)))))))))))).....))))).........(..((...(.(((((....))))))...))..) ( -23.30)
>DroEre_CAF1 4734 89 - 1
GGGGAUUCAAUGUCCUACUCGUAAGUUGAGGUGACAUUGCAUUCUUACUACU--UUUUUUGGCCAUCUGAAAGUCCACUUUCCUCUGCUUU
((((((.(((((((...((((.....))))..))))))).))))))......--......(((.....(((((....)))))....))).. ( -21.60)
>DroYak_CAF1 3128 89 - 1
GGGGAUUCAAUGUCUUACUCGUAAGAACAGGUGGCAUUGCAUUUCUACGUUU--AUUAUUGGGCAUCUGAAAGUCCACUUUUCUCUGCUGG
((..((.(((((((....((....))......))))))).))..))......--.......((((...(((((....)))))...)))).. ( -19.80)
>consensus
GGGGAUUCAAUGUCUAACUCGUAAGUUCGGGUGACAUUGCAUUUUUACCUUU__AUUUUUGGCCAUGUGAAAGUCUAUUUUCCUCUGCUGG
((((((.(((((((..(((((......)))))))))))).))))))..............(((.....(((((....)))))....))).. (-16.24 = -15.88 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:19 2006