Locus 1934

Sequence ID	3R_DroMel_CAF1
Location	5,459,000 – 5,459,112
Length	112
Max. P	0.790105

overview

Window 0

Location	5,459,000 – 5,459,112
Length	112
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	93.10
Mean single sequence MFE	-17.25
Consensus MFE	-13.77
Energy contribution	-13.77
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.12
Structure conservation index	0.80
SVM decision value	0.58
SVM RNA-class probability	0.790105
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5459000 112 - 27905053
AGCAUCCACUUACAAAUACAAA-AAUUAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACA--UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGAUGGUAGU
..((((................-....(((((((((.....(((........)))(((((....)--)))).....)))))))))....((((......))))...))))..... ( -17.30)
>DroSec_CAF1 4655 112 - 1
AACAUCCACUUACAAAUACAAA-AAUUAAAUAGAGCCAAGUGUAUAUAUCAUUACGUAAUAAUCA--UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGAUGGUAGU
..((((................-....(((((((((.(((((((........)))(((((....)--)))).)))))))))))))....((((......))))...))))..... ( -18.50)
>DroSim_CAF1 4220 113 - 1
AACAUCCACUUACAAAUACAAAAAAUUAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACA--UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGACGGUAGU
.....((....................(((((((((.....(((........)))(((((....)--)))).....)))))))))....((((......))))......)).... ( -15.20)
>DroEre_CAF1 4502 112 - 1
AACAACCACUUAGAAAUACAAA-AAUGAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACAUAUUACAAUUUGUUCUAUUUUCAACAGUAAAGUAACUGAGAU--AGUAGU
................(((...-..(((((((((((.....(((........)))((((((....)))))).....)))))).))))).((((......))))....--.))).. ( -18.00)
>consensus
AACAUCCACUUACAAAUACAAA_AAUUAAAUAGAGCCAACUGUAUAUAUCAUUACGUAAUAAACA__UUACAAUUUGUUCUAUUUUCAACAGUAAAAUAACUGAAAGAUGGUAGU
................(((........(((((((((.....(((........)))((((........)))).....)))))))))....((((......)))).......))).. (-13.77 = -13.77 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:15 2006