| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,454,619 – 5,454,738 |
| Length | 119 |
| Max. P | 0.910674 |
| Location | 5,454,619 – 5,454,738 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -22.77 |
| Energy contribution | -23.43 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5454619 119 + 27905053 AAUCGCUCGAAAAGAGCAAUGGAAA-AAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC ....((((.....))))((((((((-...(((((((.(((((.(((((((...)))))).).))))).))))...)))..))))))))(((((.(.....).)))))............. ( -27.20) >DroSim_CAF1 8601 120 + 1 AAUGGCACCAAAAGAGCAUUGGAAAUAAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC ..((((.......(((((.(((((((...(((((((.(((((.(((((((...)))))).).))))).))))...))).)))))))..))))).(.....)......))))......... ( -24.30) >DroYak_CAF1 7235 119 + 1 AAACGCC-ACAAAGAGCAAUGGAAAUAAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC .......-......((((((((((((...(((((((.(((((.(((((((...)))))).).))))).))))...))).)))))))))(((((.(.....).)))))))).......... ( -25.10) >consensus AAUCGCACAAAAAGAGCAAUGGAAAUAAAACAACAAGUUGUAUGUUUAUAAAUUAUAAGUCUUACAAAUUGUAAUUGUGGUUUCCGUUUGCUUAGAACAUCAAAGCAGCUACCAACACAC ..............((((((((((((...(((((((.(((((.(((((((...)))))).).))))).))))...))).)))))))))(((((.(.....).)))))))).......... (-22.77 = -23.43 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:12 2006