| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,454,464 – 5,454,583 |
| Length | 119 |
| Max. P | 0.842268 |
| Location | 5,454,464 – 5,454,583 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -20.44 |
| Energy contribution | -21.67 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5454464 119 - 27905053 CCACGUGAACA-AAUCACGGCCGAAUGGCAACGCUGUCUAUAUCGUCGUGUCUACAUCGAAUUUUGAUUUACAGAAAAACGGUGUUGCCACUCCAAAUGGUUUUCAAAGUGCUGUUCGAA ...(((((...-..)))))..((((((((((((((((.....(((..((....))..))).(((((.....)))))..)))))))))))...((....)).............))))).. ( -31.80) >DroSim_CAF1 8442 119 - 1 CCACGUGAACA-AAUCACGGCCAAAUGGCAACGCUGUCUACAUCGUCGUGUCUACAUCGAUUUUUGAUUUACACAAAAACGGAGUUGCCACUCCAAAUGGUUUUCAAAUUGCUGUUCGAA ((((((((...-..)))))......(((((((.((((.......((((((....)).))))(((((.......))))))))).))))))).......))).................... ( -26.10) >DroYak_CAF1 7097 98 - 1 CCACGUGAACAAAAUCACGGCGAGUUGGCAACGCU------ACAAUCGGGUCUAUAUCGAAUUUCGA-----ACGAAAGCGGUGCUGCCACUCAAAAUGUUAUUCAAAA----------- ...(((((......)))))..((((.((((.(((.------.(..((((.......)))).((((..-----..)))))..))).))))))))................----------- ( -26.40) >consensus CCACGUGAACA_AAUCACGGCCAAAUGGCAACGCUGUCUA_AUCGUCGUGUCUACAUCGAAUUUUGAUUUACACAAAAACGGUGUUGCCACUCCAAAUGGUUUUCAAAAUGCUGUUCGAA ...(((((......)))))......((((((((((((........(((.........))).(((((.......))))))))))))))))).............................. (-20.44 = -21.67 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:11 2006