Locus 1930

Sequence ID 3R_DroMel_CAF1
Location 5,453,755 – 5,453,875
Length 120
Max. P 0.902064
window3175

overview

Window 5

Location 5,453,755 – 5,453,875
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.39
Mean single sequence MFE -39.32
Consensus MFE -27.55
Energy contribution -28.87
Covariance contribution 1.31
Combinations/Pair 1.35
Mean z-score -1.61
Structure conservation index 0.70
SVM decision value 1.02
SVM RNA-class probability 0.902064
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5453755 120 - 27905053
GAACGCUCCUGCAUAUCCUUGCAUUUGUGGCUGUCCAGGCUCUGGGUGCUUGAAAAGACCUUUAAGCAUUCCGGGCACUCGACGGUGGAAUUGCUAUUGCGAUAACAUUGGUGGUUAUCC
...(((...((((......))))...)))((((((.((((((.(((((((((((......))))))))))).)))).)).))))))(((((..(((.((......)).)))..))..))) ( -42.40)
>DroSec_CAF1 7744 120 - 1
GAACGCUCCUGCAUAUCCUUGCAUUUGUGGCUGUCCAGGCUCUGGGUGCUUGAAAAGACUUUCAAGCAUACCGGGCACUCGACGGUGGAAUUGCUGUUGCGAUAACAUAGGUGGUUAUCC
.(((((....)).........((((((((((((((.((((.((((((((((((((....)))))))))).)))))).)).))))))...(((((....)))))..))))))))))).... ( -44.70)
>DroSim_CAF1 7707 120 - 1
GAACGCUCCUGCAUAUCCUUGCAUUUGUGGCUGUCCAGGCUCUGGGUGCUUGAAAAGACCUUCAAGCAUACCGGGCACUCGACGGUGGAAUUGCUGUUGCGAUAACAUAGGUGGUUAUCC
.(((((....)).........((((((((((((((.((((.(((((((((((((......))))))))).)))))).)).))))))...(((((....)))))..))))))))))).... ( -44.00)
>DroEre_CAF1 6410 111 - 1
GGGUGUUC---------CUCGCAUUUGUGACUGUCCAGGCUUUGGGUACUUGAGAAUACCUUCAAGCAUAUAGGGCACUCAACAGUGGAAUUGCUGUUGCGAUAGCACAGGUGCUUAUCC
(((((...---------...(((((((((.(((((...((((((.((.((((((......)))))).)).))))))...(((((((......))))))).)))))))))))))).))))) ( -38.70)
>DroYak_CAF1 6372 120 - 1
GGAUUUUCCUGCAUAUCCUCGCAUUUGUGGCUGUCAAGGCUAUGAGUACUUGAGAAGACUUUCAAGCAUACAGGGCACUCAACAGUGGAAUCGCUGUUGCGAUAGCAUAGGUGCUUAUCC
((((..........))))..(((((((((.(((((...(((.((.((.(((((((....))))))).)).)).)))...((((((((....)))))))).))))))))))))))...... ( -40.70)
>DroAna_CAF1 7531 117 - 1
---CCCUCUUCCAGAGACUGACACUUAUGCAAGUCUAAUCCUCGGCUGGUGGGAAAAACCUUCAAGCAAACAGGGCACUCGACGGCGGAGUUAUUGGUUUUGAAGCACUGAUGCUGAUCC
---...((..(((((((((..((....))..)))))....(((.((((.((((.....(((..........)))...)))).)))).)))...))))....))((((....))))..... ( -25.40)
>consensus
GAACGCUCCUGCAUAUCCUUGCAUUUGUGGCUGUCCAGGCUCUGGGUGCUUGAAAAGACCUUCAAGCAUACAGGGCACUCGACGGUGGAAUUGCUGUUGCGAUAACAUAGGUGCUUAUCC
.....................((((((((((((((.((((((.(..((((((((......))))))))..).)))).)).))))))...(((((....)))))..))))))))....... (-27.55 = -28.87 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:10 2006