Locus 1929

Sequence ID 3R_DroMel_CAF1
Location 5,451,218 – 5,451,334
Length 116
Max. P 0.625316
window3174

overview

Window 4

Location 5,451,218 – 5,451,334
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 86.72
Mean single sequence MFE -34.14
Consensus MFE -28.92
Energy contribution -30.60
Covariance contribution 1.68
Combinations/Pair 1.04
Mean z-score -1.49
Structure conservation index 0.85
SVM decision value 0.19
SVM RNA-class probability 0.625316
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5451218 116 - 27905053
UUGUGUGCAUUGUACCCAUUAUAUAUACCUUUACCAUUCCAUACGCAGUGUGCCAAUGAGGCAGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU
(((.((((....................................((((((..(((....((..((....))..))....)))..))))))(((((......))))))))))))... ( -33.20)
>DroSec_CAF1 5168 115 - 1
UUGUGUCCAUUGUACACAUUA-AUAUACCUAUAUCAUUCCAUACGCAGUGUGCCAAUGAGGCAGGCUUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU
..((((((......((((((.-((((....))))..........(((((.((((.....)))).)).))).....))))))((((.(((......))).).)))))))))...... ( -33.20)
>DroSim_CAF1 5124 116 - 1
UUGUGUCCAUUGUACCCAUUAUAUAUACCUUUAUCAUUCCAUACGCAGUGUGCCAAUGAGGCGGGCUUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU
..((((((....................................((((((..(((....((.(((....))).))....)))..))))))..(((......)))))))))...... ( -35.30)
>DroEre_CAF1 3829 96 - 1
--------------------GUACCUAAAUAUAUCUUUCCACACGCAGUGUGCCAAUGAGGCGGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU
--------------------..........................((((..(((....((.(((....))).))....)))..))))(((((((......)))))))........ ( -29.60)
>DroYak_CAF1 3693 116 - 1
UUGUGCCCAUUAUGCCCAUUAUAUGUACCUAUAUCAUUCCACACGCAGUGUGCCAAUGAGGCGGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU
..((((((.((.(((.....(((((....)))))......(((.((((((..(((....((.(((....))).))....)))..)))))).)))...))).)).))))))...... ( -39.40)
>consensus
UUGUGUCCAUUGUACCCAUUAUAUAUACCUAUAUCAUUCCAUACGCAGUGUGCCAAUGAGGCGGGCCUGCUCACCGAUGUGGUCCACUGCCUGUCCAGCGAGACGGGCACCAAAUU
..((((((....................................((((((..(((....((.(((....))).))....)))..))))))..(((......)))))))))...... (-28.92 = -30.60 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:08 2006