| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,441,392 – 5,441,512 |
| Length | 120 |
| Max. P | 0.956554 |
| Location | 5,441,392 – 5,441,512 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.14 |
| Mean single sequence MFE | -32.47 |
| Consensus MFE | -27.36 |
| Energy contribution | -27.12 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5441392 120 - 27905053 GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAAAUGUUUGUGAGAAAGCCUUUCCCUGGAGCAACGAAAAAAUCUAAAAUAUAUAUGU (((...))).......((((.(((.((((.........(((((....))))).(((((((((.....))))))))).......)))).)))..))))....................... ( -30.50) >DroSec_CAF1 27869 119 - 1 GCCCAAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAACUGUUUGUGAGAAAGCGUUUCCCUGGAGCAACGAA-AAAUCUAAAAUAUAUAUGU (((...))).......((((.(((.((((..((.....(((((....))))).(((((((((.....))))))))).....)))))).)))..))))...-................... ( -30.60) >DroSim_CAF1 23034 119 - 1 GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAAAUGUUUGUGAGAAAGCGUUUCCCUGGAGCAACGAA-AAAUCUAAAGUAUAUAUGU (((...))).......((((.(((.((((..((.....(((((....))))).(((((((((.....))))))))).....)))))).)))..))))...-................... ( -30.60) >DroEre_CAF1 28526 119 - 1 GCCCGGGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAUGCCGGAUUUAUAGACCGAAUGUUUGUGAGAAAGCGUUUGCCUGGGGCAACGAA-AAAUCUAAAAUAUAUAUGU ((((.(((((((...(((((............))))).(((((....)))))........)))((((((((......)))))))))))).))))......-................... ( -36.40) >DroYak_CAF1 29034 119 - 1 GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAUGGCGGACUUAUAGACCGAAUGUUUGUGAGAAAGCGUUUCCCUGGGGCAACGAA-AAAUCUAAAAUAUACAUGU ((((.(((((((..(((((.(((((((...............))).)))).)))))....))))(((((((......)))))))..))).))))......-................... ( -34.26) >consensus GCCCGAGGCGGUAAAAGUUGGCCAAGGAAUUACAAUUAUCGGCUUAAGCCGGACUUAUAAGCCAAAUGUUUGUGAGAAAGCGUUUCCCUGGAGCAACGAA_AAAUCUAAAAUAUAUAUGU (((...))).......((((.(((.((((.........(((((....))))).(((((((((.....))))))))).......)))).)))..))))....................... (-27.36 = -27.12 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006