Locus 1919

Sequence ID 3R_DroMel_CAF1
Location 5,441,089 – 5,441,209
Length 120
Max. P 0.561667
window3154

overview

Window 4

Location 5,441,089 – 5,441,209
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -24.34
Consensus MFE -21.74
Energy contribution -21.54
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.28
Structure conservation index 0.89
SVM decision value 0.06
SVM RNA-class probability 0.561667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5441089 120 - 27905053
AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA
.....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... ( -22.80)
>DroSec_CAF1 27573 120 - 1
AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA
.....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... ( -22.80)
>DroSim_CAF1 22742 120 - 1
AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA
.....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... ( -22.80)
>DroEre_CAF1 28234 120 - 1
AUCAUGAUGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGCAAACGUAACAAAAAUCGAAAUA
.((.((.(((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))).))(((....)))..........)).... ( -22.60)
>DroYak_CAF1 28731 120 - 1
AUCAUGGCGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGCAAACGUAACAAACAUCGAAAUA
.((((((((.((((....))))..))))))))....((((((.((((....(((....))))))).))))))..........((((((......(((....)))......)))))).... ( -30.70)
>consensus
AUCAUGACGGCGUCUAAUGAUGAAUGCCAUGAAUAAAAGGCUCAAGAACGCUCGGACACGAUUUUCAGCUUUAUUUAUCACCUCGAUGCUAACAACGAAAACGUAACAAAAGUCCAAAUA
.....(((((((((...(((((((((((..........)))....(((...(((....)))..)))......))))))))....))))))....(((....))).......)))...... (-21.74 = -21.54 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:50 2006