Locus 1913

Sequence ID 3R_DroMel_CAF1
Location 5,437,800 – 5,437,920
Length 120
Max. P 0.685598
window3144

overview

Window 4

Location 5,437,800 – 5,437,920
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.50
Mean single sequence MFE -19.98
Consensus MFE -15.48
Energy contribution -16.88
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.77
SVM decision value 0.32
SVM RNA-class probability 0.685598
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5437800 120 + 27905053
AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUUAAUAAACUUUUUAAUUUGUUGUAGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC
...........(((((((....)))))((((((((((..........((((((((....(((((((........)))))))...)))..)))))...........))))))))))...)) ( -21.40)
>DroSec_CAF1 24518 120 + 1
AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUAAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC
...........(((((((....)))))((((((((((..........((((((((.....((((((........))))))....)))..)))))...........))))))))))...)) ( -20.60)
>DroSim_CAF1 19568 120 + 1
AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC
...........(((((((....)))))((((((((((..........((((((((....(((((((........)))))))...)))..)))))...........))))))))))...)) ( -21.40)
>DroEre_CAF1 25036 119 + 1
AUAAUUCAAAAGCCCGUCACUUGACUUAAAAUAAUUCCUUUUU-UUGUGCCAUCCAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAAUAAUUUCAUGC
....(((........(((....)))..................-...(((((.(((...(((((((........))))))).)))....)))))...........)))............ ( -15.70)
>DroYak_CAF1 25422 120 + 1
AUAAUUCAAAAGCCAGUCACUUGACUUAAAAUAAUUCCUUUUUAUUGUGCCAUCCAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCUUUCGAAUUAAUUUCAUGC
.((((((.((((..((((....)))).....................(((((.(((...(((((((........))))))).)))....)))))......)))).))))))......... ( -20.80)
>consensus
AUAAUUCAAAAGCAAGUCACUUGACUUAAAUUAAUUCCAUAUUAUUGUGCCAUACAUUUUAAUAAACUUUUUAAUUUGUUGUUGGUAUUUGGCAAUCUUUCCUUCGAAUUAAUUUCAUGC
...........(((((((....)))))((((((((((..........(((((.......(((((((........)))))))........)))))...........))))))))))...)) (-15.48 = -16.88 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:40 2006