Locus 1912

Sequence ID 3R_DroMel_CAF1
Location 5,436,047 – 5,436,165
Length 118
Max. P 0.630406
window3143

overview

Window 3

Location 5,436,047 – 5,436,165
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -29.62
Consensus MFE -21.74
Energy contribution -23.02
Covariance contribution 1.28
Combinations/Pair 1.08
Mean z-score -1.93
Structure conservation index 0.73
SVM decision value 0.20
SVM RNA-class probability 0.630406
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5436047 118 - 27905053
AUUUUUUUUGUGGUUUGGCUAGUUUGUUCUCCAGAUCAAACGAAUCGCGCAGAUUGGGGAAUAAAGAAGUGAU-UUUU-UUUAUUUUUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA
...((((((((((..((....(((((.((....)).))))).....((((((...((((((((((((((....-))))-)))))))))).))).))).))..))))))))))........ ( -32.70)
>DroSec_CAF1 22735 117 - 1
AUUC--UUUGUGGUUUGGCCAGUUUGUUCUCCAGAUCAAACGAAUCACGCAGAUUGGGGGAUAAAGAAGUGAUCUUUU-UUUAUUUUUUGCUGACGCACAUUUCACGAAAACUUAUAGAA
....--(((((((..((((((((.((((((((((.((...((.....))..))))))))))))(((((((((......-.)))))))))))))..)).))..)))))))........... ( -27.90)
>DroSim_CAF1 17800 117 - 1
AUUU--UUUGUGGUUUGGCCAGUUUGUUCGCCAGAUCAAACGAAUCGCGCAGAUUGGGGGAUAAAGAAGUGAUCUUUU-UUUAUUUUUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA
((((--(((((((..((....(((((.((....)).))))).....((((((...((((((((((((((.....))))-)))))))))).))).))).))..)))))))))))....... ( -32.40)
>DroEre_CAF1 23185 116 - 1
AUUU--UUUGUGGUUUGGCUAGUUUGUUGUCCAGAUCAAACGAAUCGCGCAGAUUGGGGGAUAAAAAAGUGUUUUUUC--UUUUUUGUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA
((((--(((((((..((((((((((((.((...((((....).)))))))))))))((.((((((((((........)--))))))))).))...)).))..)))))))))))....... ( -28.30)
>DroYak_CAF1 23621 117 - 1
AUU---UUUGUGGUUUGGCUAGUUUGUUGUCCAGAUCAAACGAAUCGCGUAGUUUGGGGGAUAAAGAAGUUAUUUUUAUUUUUUUUCUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA
.((---(((((((..((((((((.((((.(((((((...(((.....))).))))))).))))((((((..(........)..))))))))))..)).))..)))))))))......... ( -26.80)
>consensus
AUUU__UUUGUGGUUUGGCUAGUUUGUUCUCCAGAUCAAACGAAUCGCGCAGAUUGGGGGAUAAAGAAGUGAUCUUUU_UUUAUUUUUUGCUGACGCACAUUUCACGAAAAAUUAUAGAA
......(((((((..((((((((.(((((((((.(((...((.....))..))))))))))))(((((((((........)))))))))))))..)).))..)))))))........... (-21.74 = -23.02 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:39 2006