Locus 1910

Sequence ID 3R_DroMel_CAF1
Location 5,434,779 – 5,434,887
Length 108
Max. P 0.524869
window3141

overview

Window 1

Location 5,434,779 – 5,434,887
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.74
Mean single sequence MFE -27.46
Consensus MFE -19.88
Energy contribution -19.36
Covariance contribution -0.52
Combinations/Pair 1.12
Mean z-score -1.47
Structure conservation index 0.72
SVM decision value -0.02
SVM RNA-class probability 0.524869
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5434779 108 + 27905053
CUCGAUAAGUUCGUGGAUUUCAUUGUUU------------AUAACAAUGCGAAUUUGUCAACGGAAACGAUCUGCGACAUCGGCAGCCACGAGUAGCAAUUGCUAACAUGCAAUGAGUAU
(((((((((((((.......((((((..------------...))))))))))))))))..((....))...(((.((.(((.......))))).)))(((((......))))))))... ( -30.31)
>DroSec_CAF1 21501 106 + 1
--CGAUAAGUUCGUGGAUUUCAUUGUUU------------AUAACAAUGUGAAUUUGUCAACGGAAACGAUCUGCGACAUCGACAGCCACGAGUAGCAAUUGCUCACAUGCAAUGAGUAU
--.......(((((((((((((((((..------------...)))))).))))(((((..((....))......(....)))))))))))))..((.(((((......)))))..)).. ( -26.60)
>DroSim_CAF1 16543 106 + 1
--CGAUAAGUUCGUGGAUUUCAUUGUUU------------ACAACAAUGUGAAUUUGUCAACGGAAACGAUCUGCGACAUCGACAGCCACGAGUAGCAAUUGCUCACAUGCAAUGAGUAU
--.......(((((((((((((((((..------------...)))))).))))(((((..((....))......(....)))))))))))))..((.(((((......)))))..)).. ( -26.60)
>DroEre_CAF1 21971 103 + 1
--CGAUAAGUCAGCGGAUUUCAUUGUUUGGUGAUUGGGCUAUAACAAUGUGAAUUCGUCAACGGAAACGAUCUGCGAC---------------UAACAAUUGCUCACAUGCAAUGAGUAU
--.....((((.(((((((((((((((((((......)))).))))))).))))))))...((....))......)))---------------).((.(((((......)))))..)).. ( -28.90)
>DroYak_CAF1 22390 103 + 1
--CGAUAAGUCCGCGGAUUUCAUUGUUUCGUGAUUGGGCUUUAACAAUGUGAAUUUGUCAACGGAAACGAUCGGCGAC---------------UAACAAUUGCUCACAUGCAAUGAGUAU
--((((...((((((((((((((((((..((......))...))))))).)))))))....))))....))))...((---------------(....(((((......))))).))).. ( -24.90)
>consensus
__CGAUAAGUUCGUGGAUUUCAUUGUUU____________AUAACAAUGUGAAUUUGUCAACGGAAACGAUCUGCGACAUCG_CAGCCACGAGUAGCAAUUGCUCACAUGCAAUGAGUAU
........(((.((((((..(((((((...............)))))))............((....))))))))))).................((.(((((......)))))..)).. (-19.88 = -19.36 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:37 2006