| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,434,287 – 5,434,399 |
| Length | 112 |
| Max. P | 0.690001 |
| Location | 5,434,287 – 5,434,399 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.29 |
| Mean single sequence MFE | -36.60 |
| Consensus MFE | -32.66 |
| Energy contribution | -33.06 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5434287 112 + 27905053 AUGGAGCCGGCGGAUUCAAGCCUAACUGUUGAGUGGCAGUUAAAUGCUAAUUUGCCGGGCUGACUGACCGUUGCUGACUGCCGGUUU-UUGGUUAACUGCUCUUGAAUCUUU-------A ..((((((((((((((..(((.((((((((....))))))))...))))))))))))(((..(..(((((..((.....))))))).-)..)))....))))).........-------. ( -37.40) >DroSec_CAF1 21001 113 + 1 AUGGAUCCGGCGGACUCGAGCCUAACUGUUGAGUGGCAGUUAAAUGCUAAUUUGCCGGGCUGACUGACCGUUGCUGACUGCCGGUUUUUUGGUUAACUGCUCUUGAAUCUUU-------A ..((((((((((((....(((.((((((((....))))))))...)))..))))))))((..(..(((((..((.....)))))))..)..)).............))))..-------. ( -33.80) >DroSim_CAF1 16051 113 + 1 AUGGAGCCGGCGGACUCGAGCCUAACUGUUGAGUGGCAGUUAAAUGCUAAUUUGCCGGGCUGACUGACCGUUGCUGACUGCCGGUUUUUUGGUUAACUGCUCUUGAAUCUUU-------A ..((((((((((((....(((.((((((((....))))))))...)))..)))))))(((..(..(((((..((.....)))))))..)..)))....))))).........-------. ( -37.10) >DroEre_CAF1 21498 119 + 1 AUGGAGCCGGCGGAUUCGAGCCUAACUGUUGAGUGGCAGUUAAAUGCUAAUUUGCCGGGCUGACUGACCGUUGCUGACUGCCGGUUU-UUGGUUUACUGGUCUUGAAUCUUGUAUCUUUA .(((((...(((((((((((((.(((((..((.(((((((((...((......))(((.........)))....))))))))).)).-.)))))....)).)))))))).)))..))))) ( -38.70) >DroYak_CAF1 21887 112 + 1 AUGGAGCCGGCGGAUUCGAGCCUAACUGUUGAGUGGCAGUUAAAUGCUAAUUUGCCGGGCUGACUGACCGUUGCUGACUGCCGGUUU-UUGGUUUACUGGUCUUGAAUCUUG-------A ....((((((((((((..(((.((((((((....))))))))...))))))))))).))))(((((((((..((((.....))))..-.)))))....))))..........-------. ( -36.00) >consensus AUGGAGCCGGCGGAUUCGAGCCUAACUGUUGAGUGGCAGUUAAAUGCUAAUUUGCCGGGCUGACUGACCGUUGCUGACUGCCGGUUU_UUGGUUAACUGCUCUUGAAUCUUU_______A ..(((.((((((((((..(((.((((((((....))))))))...)))))))))))))((..(..(((((..((.....)))))))..)..))..............))).......... (-32.66 = -33.06 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:36 2006