Locus 1902

Sequence ID 3R_DroMel_CAF1
Location 5,428,445 – 5,428,557
Length 112
Max. P 0.787515
window3129

overview

Window 9

Location 5,428,445 – 5,428,557
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -25.96
Consensus MFE -22.08
Energy contribution -21.80
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.85
SVM decision value 0.58
SVM RNA-class probability 0.787515
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5428445 112 + 27905053
AGUCCGACUCUUUGUUGGAAUGAAAAGGUAGAUGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACAGCUUAAACUU
..((((((.....)))))).............(((((((((..(......)..))))......(((((..(((....)))))))).................)))))..... ( -24.40)
>DroSec_CAF1 15232 112 + 1
AGUCCGACUCUUUGUUGGCAUGAAAAGGCAGAGGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU
.(((.(.((((((....((.(....).)).))))))).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -26.60)
>DroSim_CAF1 10212 112 + 1
AGUCCGACUCUUUGUUGGCAUGCAAAGGCAGAGGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU
.(((.(..((((((((.(....)...))))))))..).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -26.30)
>DroEre_CAF1 15622 112 + 1
AGUCCGACUCUUUGUUGGAAUGAAAACGCAGAAGGGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU
.((((...(((.((((........)))).))).))))..........((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -24.60)
>DroYak_CAF1 15941 112 + 1
AGUCCGACUCUUUGUUGGAAUGAAAAAGCAAAGGGGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU
.(((.(.(((((((((..........))))))))).).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... ( -27.90)
>consensus
AGUCCGACUCUUUGUUGGAAUGAAAAGGCAGAGGAGCAGACAACAGAUGAGGCGUCUUAGAACAUGGACAAUGGAAACAUUCCAUAAAAAUUCCUAAAUACGGCUUAAACUU
.(((.(.(((((((((..........)))))).)))).)))......((((.(((.((((...(((((..(((....))))))))........))))..))).))))..... (-22.08 = -21.80 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:25 2006