Locus 1901

Sequence ID 3R_DroMel_CAF1
Location 5,427,705 – 5,427,820
Length 115
Max. P 0.539427
window3128

overview

Window 8

Location 5,427,705 – 5,427,820
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 88.51
Mean single sequence MFE -28.77
Consensus MFE -23.70
Energy contribution -23.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.82
SVM decision value 0.01
SVM RNA-class probability 0.539427
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5427705 115 - 27905053
UGCAAGUGGGUGGCGCCCAUUGAGGAACCAAUGGCGACGAGAACCAGUCGCAACUGGAUCAACAACACAGCCAUCUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA
((((..((((((((.....(((..((.(((...(((((........)))))...))).))..)))....)))))))).........(((.....)))........))))...... ( -32.20)
>DroSec_CAF1 14515 102 - 1
UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGAGAACCAGCCACAACUGGAUC------------AUCUACAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA
((((.((.((((...(((((((.......-(((....)))((.((((......)))).))------------...........)))))))..))))...))....))))...... ( -26.70)
>DroSim_CAF1 9497 102 - 1
UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGAGAACCAGCCACAACUGGAUC------------AUCUACAAACACAAUGGGCAUACUAAGGCAAUGUGCAGUAAUA
((((.((.((((..((((((((.......-(((....)))((.((((......)))).))------------...........)))))))).))))...))....))))...... ( -29.50)
>DroEre_CAF1 14922 113 - 1
UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGCCGACCAGCAACAACUGGAUCAACAACAUAGCCA-CUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA
((((.((.((((...(((((((.(.....-.(((((....)((((((......)))).)).........))))-.......).)))))))..))))...))....))))...... ( -28.52)
>DroYak_CAF1 15205 113 - 1
UGCAAGUGGGUGGCGCCCAUUGAGGAACU-UUGGCGACGACAACCAGCAACAACUGGAUCAACAACAUAGCCA-CUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA
((((.((.((((...(((((((.(.....-.(((((....)..((((......))))............))))-.......).)))))))..))))...))....))))...... ( -26.92)
>consensus
UGCAAGUGGGUGGCGCCCAUUGAGGAACU_UUGGCGACGAGAACCAGCCACAACUGGAUCAACAACA_AGCCAUCUAAAAACACAAUGGGAAUACUAAGGCAAUGUGCAGUAAUA
((((.((.((((...(((((((.........((....))....((((......))))..........................)))))))..))))...))....))))...... (-23.70 = -23.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:24 2006