Locus 1894

Sequence ID 3R_DroMel_CAF1
Location 5,420,934 – 5,421,025
Length 91
Max. P 0.700692
window3106

overview

Window 6

Location 5,420,934 – 5,421,025
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 84.87
Mean single sequence MFE -24.20
Consensus MFE -17.94
Energy contribution -18.75
Covariance contribution 0.81
Combinations/Pair 1.19
Mean z-score -1.69
Structure conservation index 0.74
SVM decision value 0.35
SVM RNA-class probability 0.700692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5420934 91 - 27905053
UGUCACUUGGCGGCAACCUUGUGCUGUGGCUCUGGACAUAUAACUAUAUCUAUAUAUUUAUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG
.(((((..((((.((....)))))))))))...(((((((((.((((((..(((((....)))))..)))))).))))))).))....... ( -24.10)
>DroSec_CAF1 7660 91 - 1
UGUCAGUUGGCGGCAACCUUGUGCCGUGGCUCUGGACAUAUAACUAUAUCUAUAUAUCCAUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG
((((((.(.((((((......)))))).)..)).))))............(((((((((((((....)))))))))))))........... ( -26.80)
>DroEre_CAF1 8144 81 - 1
UGUCACUUUGCGGCAACCUUGUGCUGCGGCUCUGGACAUGCG------AGUAUAA----CUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG
((((...((((((((......)))))))).....)))).(((------.(((((.----.(((((((....)))))))))))))))..... ( -25.00)
>DroYak_CAF1 8366 87 - 1
UGUCACUUUGCGGCAACCUUGUGCUGUGGCUCUGGACAUACGAGUACGAGUAUAA----CUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG
((((...(..(((((......)))))..).....))))..((.(((((.((((..----(((((....))))))))).)))))))...... ( -20.90)
>consensus
UGUCACUUGGCGGCAACCUUGUGCUGUGGCUCUGGACAUACAACUAUAACUAUAA____AUAUAUCUAUAUGGGUAUGUGUACCGCUUAUG
.........((((((......))))))(((..((.((((((...((((.(((((......))))).))))...)))))).))..))).... (-17.94 = -18.75 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:04 2006