Locus 189

Sequence ID 3R_DroMel_CAF1
Location 848,068 – 848,184
Length 116
Max. P 0.577018
window319

overview

Window 9

Location 848,068 – 848,184
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.63
Mean single sequence MFE -30.18
Consensus MFE -16.74
Energy contribution -18.05
Covariance contribution 1.31
Combinations/Pair 1.19
Mean z-score -2.22
Structure conservation index 0.55
SVM decision value 0.09
SVM RNA-class probability 0.577018
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 848068 116 - 27905053
CAUAUUUUAUAACAAUAAAGCAGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGGGCACAUGU----AUUCUGUGCGGAAACUCACGCAGAUGUGGCAAA
......................((((((.(.((.(((.((.((((((..((((((.((((........))))..)))))))))----))).)))))(....)....)).).))))))... ( -34.80)
>DroSec_CAF1 23745 120 - 1
CAUAUUUUAUAACAAUAAAGCCGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGAGCACAUGUACAUAUGUUGUGCGGAAACUAACACAGAUGUAGCUAA
......................((((((.(.(((.(((((..(((((..((((((..(((........)))..).))))))))))...))))))))(....).......).))))))... ( -34.00)
>DroSim_CAF1 22995 116 - 1
CAUAUUUUAUAACAAUAAAGCAGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGAGCACAUGU----AUGUUGUGCCGAAACUAACACAGAUGUAGCUAA
.....................(((((((.(....((((((((((((...((...)).)))).)))).))))(((.(((((...----....))))))))..........).))))))).. ( -30.20)
>DroEre_CAF1 24827 100 - 1
CAUAUUCUACAACAAUAAAGCAGCUACAGCAGCGGCAACAAGGUGAAAAUGUGCCUGGCACUUUUGU--------------------AUUCCUUGCGGAAACUCACACAAAUGUGGCUAA
.....................(((((((...(((....)((((...(((.((((...)))).)))..--------------------...))))))(....).........))))))).. ( -21.70)
>consensus
CAUAUUUUAUAACAAUAAAGCAGCUACGACAGCAGCAACAAAGUGCAAAUGUGCCAGGCACUUUUGUUUGCUCGAGCACAUGU____AUGCUGUGCGGAAACUAACACAGAUGUAGCUAA
......................((((((..((((((((..((((((...........)))))))))).))))..................(((((.(....)...))))).))))))... (-16.74 = -18.05 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:42 2006