| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,400,466 – 5,400,580 |
| Length | 114 |
| Max. P | 0.607600 |
| Location | 5,400,466 – 5,400,580 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.49 |
| Mean single sequence MFE | -35.35 |
| Consensus MFE | -21.59 |
| Energy contribution | -21.84 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5400466 114 - 27905053 -UCGGCCGAGCUGUUA-AUAAUUAGCGUUUAUUUCAGCUAGUGCGUCACUUGAGCACGUUUCCCAUUAAUGCGCAAUUGCCCGUCUACCU--GGCAGGGCAGCUGAAA-AAUCGGCUUU- -..((((((((((...-.....)))).....((((((((.((((.((....)))))).....................(((((((.....--))).))))))))))))-..))))))..- ( -41.00) >DroSim_CAF1 10195 114 - 1 -UCGGCCGAGCUGCUA-AUAAUUAGCGUUUAUUUAAGCUAGUGCGUCACUUGAGCACGUUUCCCAUUAAUGCGCAAUUGCCCGUCUACCU--GGCAGGGCAGCUGAAA-AAUCGGCUUU- -..((((((((.((..-.....((((..........))))((((.((....)))))).............))))..(((((((((.....--))).))))))......-..))))))..- ( -34.90) >DroYak_CAF1 10584 119 - 1 GUCGGCCGAUCUGCUAAAUAAUUAGCGUUUGUUUGAGCUAGUGCGUCACUUGAGCACGUUUCUCAUUAAUGCGCAAUUGCCUGUCUACCUUUUGUAGGGCAGUUAAAAAAAACAGUUCU- .......((.(((...........((((.....((((...((((.((....))))))....)))).....))))(((((((...((((.....)))))))))))........))).)).- ( -30.50) >DroAna_CAF1 10112 108 - 1 -UCGCCCGAGUUGCUG-CUAAUUAGCAUUUAUUCCGAUUUGUGCGUCACUUGAGCACGUUUUCCAUUAAUGCGCAAUAGCC-------GU--GGCAGCUGGGCUGGAC-AAUCGCGUUUG -..((((.((((((..-(......(((((......((..(((((.((....)))))))..)).....)))))((....)).-------).--.)))))))))).((((-......)))). ( -35.00) >consensus _UCGGCCGAGCUGCUA_AUAAUUAGCGUUUAUUUCAGCUAGUGCGUCACUUGAGCACGUUUCCCAUUAAUGCGCAAUUGCCCGUCUACCU__GGCAGGGCAGCUGAAA_AAUCGGCUUU_ ...((((((..(((((......))))).....(((((((.((((.((....)))))).....................((((..............)))))))))))....))))))... (-21.59 = -21.84 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:50 2006