Locus 1882

Sequence ID 3R_DroMel_CAF1
Location 5,400,270 – 5,400,384
Length 114
Max. P 0.578237
window3091

overview

Window 1

Location 5,400,270 – 5,400,384
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.62
Mean single sequence MFE -29.43
Consensus MFE -17.89
Energy contribution -19.57
Covariance contribution 1.67
Combinations/Pair 1.11
Mean z-score -2.30
Structure conservation index 0.61
SVM decision value 0.09
SVM RNA-class probability 0.578237
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5400270 114 - 27905053
UUCCCUCAAUUGAGGGAUCAAAUUGUAUUAAUGACUUAUCUGCAAAGCAUCAGUUUCGCUAGUGUUCUGUA------UACAGUAUAGGAUACUUUAAAUCAGUUAGAUUUAGUUGAGUGA
.((((((....))))))................(((((...((.((((....)))).)).(((((((((((------(...))))))))))))(((((((.....))))))).))))).. ( -29.60)
>DroSim_CAF1 9999 114 - 1
UUCCCUCAAUUGAGGGAUCAAAUUAUGUUAAUUACUCAUCUGCAAGGCAUCAGUUUCGCUAGUGUUCUGUA------UACAGUAUAGGAUACUUUAAAUUAUUAAGAUUUAGUUGGGUGA
.((((((....))))))..............(((((((.((((.((((....)))).)).(((((((((((------(...)))))))))))).................)).))))))) ( -30.20)
>DroYak_CAF1 10382 120 - 1
UUCCCCCAAUUGAUGGAUCAAGUUAUGUUAAUGACUCAUCUGGAAAGCAUCAAUUUCGCUAGUCUUCAGGUGAGACCGAUAGUAUAAGAUACUUUAAAUCAUUUAGCUUUAGUUGGGUAA
....(((((((((.((.((..(((((....)))))(((((((((.(((.........)))....)))))))))))))((((((((...)))))....)))........)))))))))... ( -28.50)
>consensus
UUCCCUCAAUUGAGGGAUCAAAUUAUGUUAAUGACUCAUCUGCAAAGCAUCAGUUUCGCUAGUGUUCUGUA______UACAGUAUAGGAUACUUUAAAUCAUUUAGAUUUAGUUGGGUGA
.((((((....))))))................(((((.(((...(((.........)))(((((((((((...........)))))))))))................))).))))).. (-17.89 = -19.57 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:49 2006