| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,399,574 – 5,399,679 |
| Length | 105 |
| Max. P | 0.882910 |
| Location | 5,399,574 – 5,399,679 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.16 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -27.44 |
| Energy contribution | -27.67 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5399574 105 + 27905053 UUUUGCACGAUCACAGGUUCAUUAGCUAUCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUUCCGCAAUUUCCGCAGCAAAAUGUUGACGGAAGCAAAU .(((((.((......(((......)))...(((((...(((((......)))))...))))).......))....(((((((((.....)))).)))))))))). ( -29.90) >DroSim_CAF1 9313 105 + 1 UUUUGCCCGAUCACAGGUUCAUUAGCUGCCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUUCCGCAAUUUCCGCAGCUAAAUGUUGACGGAAGCAACA ..(((((((.(((((......((((((((.(((((...(((((......)))))...))))).((((.....))))...)))))))).)).))))))..)))).. ( -31.10) >DroYak_CAF1 9669 96 + 1 UUUUGCUCGAUCACAGGUUCAUUAGCUGCCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUU---------CCGCAGCUAAAUGUUGACGGAAGCAAAA .(((((.........(((.........)))(((((...(((((......)))))...)))))....((---------(((((((.....)))).)))))))))). ( -31.10) >consensus UUUUGCACGAUCACAGGUUCAUUAGCUGCCGCACAACAUCCUUGACCUUGAGGAGAGUGUGCCAAUUUCCGCAAUUUCCGCAGCUAAAUGUUGACGGAAGCAAAA ..((((.........(((.........)))(((((...(((((......)))))...))))).............(((((((((.....)))).))))))))).. (-27.44 = -27.67 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:48 2006