| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,375,777 – 5,375,888 |
| Length | 111 |
| Max. P | 0.684208 |
| Location | 5,375,777 – 5,375,888 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 97.00 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -23.91 |
| Energy contribution | -23.80 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5375777 111 + 27905053 ACGAUAAUGGUUGUAAUUGUGGUUCAAUAUACAGUUGCAGUUAAACUAAUAGUGCUGUAAACUAUUUUUGGUUUGUAGUCUCUGAGAAAUGGUUACUUGAAUAUGUUGAAG .(((((.(..(((((((((((........)))))))))))..)(((((.(((.(((((((((((....)))))))))))..))).....))))).........)))))... ( -24.40) >DroEre_CAF1 10975 111 + 1 ACGAUAAUGGUUGUAAUUGUGGUUCAAUAUACAGUUGCAGUUAAAAUAAUAGUGCUGUAAACUAUUUUUGGUUUGUAGUCUCUGAGAAAUGGUUACUUGUAUAUGUCGAAG .(((((.(..(((((((((((........)))))))))))..)......(((.(((((((((((....)))))))))))..)))...................)))))... ( -25.80) >DroYak_CAF1 13498 111 + 1 ACGAUAAUGGUUGUAAUUGUGGUUCAAUAUACAGUUGCAGUUAAAAUAAUAGUGCUGUAAACUUUUUUUGGUUUGUAGUCUCUAAGAAAUGGUUACUUGUAUAUGUUGAAG .(((((.(..(((((((((((........)))))))))))..)........((((.((((...((((((((..........))))))))...))))..)))).)))))... ( -23.90) >consensus ACGAUAAUGGUUGUAAUUGUGGUUCAAUAUACAGUUGCAGUUAAAAUAAUAGUGCUGUAAACUAUUUUUGGUUUGUAGUCUCUGAGAAAUGGUUACUUGUAUAUGUUGAAG .(((((.(..(((((((((((........)))))))))))..)......(((.(((((((((((....)))))))))))..)))...................)))))... (-23.91 = -23.80 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:39 2006