Locus 1873

Sequence ID 3R_DroMel_CAF1
Location 5,367,821 – 5,367,926
Length 105
Max. P 0.975025
window3079

overview

Window 9

Location 5,367,821 – 5,367,926
Length 105
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 92.09
Mean single sequence MFE -11.50
Consensus MFE -11.10
Energy contribution -11.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.97
SVM decision value 1.74
SVM RNA-class probability 0.975025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5367821 105 - 27905053
------UUCAAAUUCAAUCAACGCAACAACUUUCAAUUCAACCAAUCC---AACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUUA
------..........(((...((((......................---.((((((..(((((....))))).))))))((((....))))))))...)))........... ( -11.30)
>DroVir_CAF1 7591 105 - 1
------UUCAAAUUCAACAACCGCAACAACUUUCAAUUCAACCAAUAC---AACAACAAAUAGUAACCCUACUGAUGUUGUGAAUGUCAAUUCUUGUACCGAUAUAAUUCCUCA
------...............((..((((...................---.((((((..(((((....))))).))))))((((....))))))))..))............. ( -11.00)
>DroPse_CAF1 2813 114 - 1
UUCGAAUUCAAAUUCAACAAACGCAACAACUUUCAAUUCAACCAAUCCACAAACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUUA
...((((....))))......((..((((.......................((((((..(((((....))))).))))))((((....))))))))..))............. ( -12.30)
>DroYak_CAF1 5686 105 - 1
------UUCAAAUUCAAUCAACGCAACAACUUUCAAUUCAACCAAUCC---AACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUCA
------..........(((...((((......................---.((((((..(((((....))))).))))))((((....))))))))...)))........... ( -11.30)
>DroMoj_CAF1 3921 105 - 1
------UUCAAAUUCAACAACCGCAACAACUUUCAAUUCAACCAAUAC---AACAACAAAUAGUAUUCCUACUGAUGUUGUGAAUGUCAAUUCUUGUACCGAUAUAAUUCCUCA
------...............((..((((...................---.((((((..(((((....))))).))))))((((....))))))))..))............. ( -10.80)
>DroPer_CAF1 2898 114 - 1
UUCGAAUUCAAAUUCAACAAACGCAACAACUUUCAAUUCAACCAAUCCACAAACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUUA
...((((....))))......((..((((.......................((((((..(((((....))))).))))))((((....))))))))..))............. ( -12.30)
>consensus
______UUCAAAUUCAACAAACGCAACAACUUUCAAUUCAACCAAUCC___AACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUCA
.....................((..((((.......................((((((..(((((....))))).))))))((((....))))))))..))............. (-11.10 = -11.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:38 2006