| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,366,399 – 5,366,515 |
| Length | 116 |
| Max. P | 0.722704 |
| Location | 5,366,399 – 5,366,515 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -48.82 |
| Consensus MFE | -29.72 |
| Energy contribution | -29.39 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5366399 116 + 27905053 GUGACAGGGUGCUAGUCUAGCCUGCGCCGGUAUAGGAUAGGUGCAGA-AGGAGGCCCAGAAGGGCUCCGAGGGACGCAACUGCAGGUUCAC---UGGCACCUGGUUCAGAUUGAGGUCCA (.(((.((((((((((..(((((((.((......))....((((...-.((((.(((....)))))))....).)))....))))))).))---))))))))..(((.....))))))). ( -47.40) >DroPse_CAF1 1317 113 + 1 GUGGCAUGGGGCCAGUCGGGCCUGUGCUGGCAUCGGGUAGGUGCAGA-AGGAGGCCCAGAAGGGCUCCU---GGCGCAAGGCCAGACUAAC---AGGCACCUGGUUUAGAUUGAGGUCGA (((.((.((((((..((((((((.(....(((((.....)))))...-.).)))))).))..)))))))---).)))..((((.(((((.(---((....)))...))).))..)))).. ( -52.60) >DroWil_CAF1 1386 113 + 1 AUGGCACGGAGCCAGGCGGGCCUGCGCCGGCAUCGGGUAUGUGCAGA-ACGAAGCCCAGAUGGGCUCUU---GGCGUAGAGCUAGGCUGAC---GGGUACCUGGUUCAAAUUGAGGUCGA ..(((.(((.(((.....)))))).)))((((((((((((.(((((.-....(((((....)))))(((---(((.....))))))))).)---).)))))))))((.....)).))).. ( -47.80) >DroYak_CAF1 4229 116 + 1 GUGGCAGGGUGCCAGUCUAGCCUGCGCCGGUAUCGGGUACGUGCAGA-AGGAGGCCCAGAAGGGCUCCGAGGGACGCAACUGCAGGCUCAC---GGGCACCUGGUUCAGAUUGAGGUCCA (.(((.(((((((.((..(((((((.(((....)))...(((.(...-.((((.(((....)))))))...).))).....))))))).))---.)))))))..(((.....))))))). ( -49.20) >DroAna_CAF1 1965 116 + 1 ---GCACGGAGCCAGACGCGCCUGGGCCGGAAUCGGAUACGUGCAGA-AGGAGGCCCAAAUGGGCUCCGAGGGGCGUAACUGCAAGCUGACAGCCGGCACUUGGUUCAGAUUUAGGUCCA ---((.((........)).))..(((((.(((((((.(((((.(...-.((((.(((....)))))))...).))))).))....((((.....))))..........))))).))))). ( -43.30) >DroPer_CAF1 1456 114 + 1 GUGGCAUGGGGCCAGUCGGGCCUGUGCUGGCAUCGGGUAGGUGCAGAAAGGAGGCCCAGAAGGGCUCCU---GGCGCAAGGCCAGACUAAC---AGGCACCUGGUUUAGAUUGAGGUCGA (((.((.((((((..((((((((.(.(((.((((.....)))))))...).)))))).))..)))))))---).)))..((((.(((((.(---((....)))...))).))..)))).. ( -52.60) >consensus GUGGCACGGAGCCAGUCGGGCCUGCGCCGGCAUCGGGUAGGUGCAGA_AGGAGGCCCAGAAGGGCUCCG___GGCGCAACGCCAGGCUAAC___AGGCACCUGGUUCAGAUUGAGGUCCA ..(((...(((((((....(((((((((.((((.......)))).....(((.((((....)))))))....)))))).................)))..)))))))........))).. (-29.72 = -29.39 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006