| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 846,193 – 846,306 |
| Length | 113 |
| Max. P | 0.599520 |
| Location | 846,193 – 846,306 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.72 |
| Mean single sequence MFE | -16.70 |
| Consensus MFE | -16.62 |
| Energy contribution | -16.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | 0.32 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 846193 113 + 27905053 CACACACACCCACA-------CCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAAAGACGGAAAGAAAAAUGAAAUGAAAUGAAAUCAAUGGCAGGGCAAUUCCCGAACAGCAGC ..............-------........(((.(((((..((((.....((((..........(.....)..........(((.......))).)))).)))).....))))).)))... ( -16.60) >DroSim_CAF1 21127 120 + 1 CACCCAAACCCACACCCACCACCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAAAGACGGAAAGAAAAAUGAAAUGGAAUGAAAUCAAUGGCAGGGCAAUUCCCAAACAGCAGC .............................(((.(((((..((((.....((((..........(.....)...............((....)).)))).)))).....))))).)))... ( -16.60) >DroEre_CAF1 22973 103 + 1 CA------------CCCACCACCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAACGACGGAAAGAAAAAUGAAA-----UGAAAUCAAUGGCAGGGCAAUUCCCAAACAGCAGC ..------------...............(((.(((((..((((.....((((..........(.....).....(((..-----.....))).)))).)))).....))))).)))... ( -16.90) >consensus CAC_CA_ACCCACACCCACCACCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAAAGACGGAAAGAAAAAUGAAAUG_AAUGAAAUCAAUGGCAGGGCAAUUCCCAAACAGCAGC .............................(((.(((((..((((.....((((..........(.....)...............((....)).)))).)))).....))))).)))... (-16.62 = -16.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:37 2006