Locus 1868

Sequence ID 3R_DroMel_CAF1
Location 5,362,813 – 5,362,932
Length 119
Max. P 0.523916
window3071

overview

Window 1

Location 5,362,813 – 5,362,932
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.33
Mean single sequence MFE -23.70
Consensus MFE -22.14
Energy contribution -22.34
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.93
SVM decision value -0.02
SVM RNA-class probability 0.523916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5362813 119 + 27905053
AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG
......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10)
>DroSec_CAF1 22272 119 + 1
AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG
......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10)
>DroSim_CAF1 21696 119 + 1
AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG
......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10)
>DroEre_CAF1 22479 119 + 1
AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG
......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10)
>DroAna_CAF1 22105 119 + 1
AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUAUGUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUU-UUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG
......................((((.(((((.(((((.((((...))))(((((..((((((.....))))))..))-))).))))).))))).)))).(((....))).......... ( -22.10)
>consensus
AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA_GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG
......................((((.(((((..((((....))))..(((((((..((((((.....))))))..)))))))......))))).)))).(((....))).......... (-22.14 = -22.34 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:30 2006