Locus 1867

Sequence ID 3R_DroMel_CAF1
Location 5,360,355 – 5,360,449
Length 94
Max. P 0.581659
window3070

overview

Window 0

Location 5,360,355 – 5,360,449
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -22.32
Consensus MFE -18.25
Energy contribution -19.33
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -1.39
Structure conservation index 0.82
SVM decision value 0.10
SVM RNA-class probability 0.581659
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5360355 94 + 27905053
AGAAAUAACUGCACAAAUCCUCUGUCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUCCUUGCCAUGGCUGUUGU---UGUUGUUGUUCUUUC
.((((.(((.((((((.....(.((((..((.((((((((.((......)).)).))))))....))..)))).)...)---)).))).))).)))) ( -19.80)
>DroSec_CAF1 19794 97 + 1
AGAAAUAACUGCAAAAAUCCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUACUUGCCAUGGCUGUUGUUCUUGUUGUUGUUGUCUC
(((((((((.((((.(((...(.((((..((.((((((((.((......)).)).))))))....))..)))).)..))).)))).)))))).))). ( -24.30)
>DroSim_CAF1 19219 94 + 1
AGAAAUAACUGCAAAAAUCCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUACUUGCCAUGGCUGUUGU---UGUUGUUGUUGUCUC
.((.(((((.((((.(((...(.((((..((.((((((((.((......)).)).))))))....))..)))).)..))---).)))).))))).)) ( -23.10)
>DroEre_CAF1 19946 94 + 1
AGAAAUAGCUGCAAAAAUGCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUCCUACUUGCCGUUGCUGCUAU---UGUUGUUGCUGUUUC
.((((((((.((((.(((((...((.((((.(((..(((((((.........)))))))....))).)))))).)).))---).)))).)))))))) ( -28.00)
>DroYak_CAF1 20965 94 + 1
AGAAAUAACUACAAAAAUGCUCUGCCAAUGCCAGCAGAAGUGAUCUUCUUCUUCAUCUCAUACUUGCCGUUGUUGCUGC---UGUUGUUGCUGUUUC
.((((((.(.((((....((...(((((((.(((..((..(((.........)))..))....))).)))))..)).))---..)))).).)))))) ( -16.40)
>consensus
AGAAAUAACUGCAAAAAUCCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUACUUGCCAUGGCUGUUGU___UGUUGUUGUUGUUUC
.((((((((.((((.........((((..((.((.((((((((.........)))))).)).)).))..))))...........)))).)))))))) (-18.25 = -19.33 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:29 2006