| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,359,070 – 5,359,177 |
| Length | 107 |
| Max. P | 0.932949 |
| Location | 5,359,070 – 5,359,177 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 87.74 |
| Mean single sequence MFE | -14.59 |
| Consensus MFE | -15.04 |
| Energy contribution | -15.16 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.04 |
| Structure conservation index | 1.03 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5359070 107 + 27905053 AGUAUUAAAACUACAUUAUCAAUAUAUUUCACAAAAUUGCAAUAUUGGUUACUUGUAAAUUUCGAUUUUUGGUGACACCAAAAACUGUAUCAACCAAAUCCAGAGAU ...........((((..((((((((................))))))))....)))).(((((....((((((((.((........)).)).))))))....))))) ( -15.69) >DroSec_CAF1 18528 96 + 1 -----------UACAUUAUCAAUAUAUUUCCCACAAUUGCAAUAUUGGUUUUUUGUAAAUUUCGAUUUUUGGUGGCACCAACAACUGUAUCAACCAAAUCCAGAGAU -----------((((..((((((((................))))))))....)))).(((((....((((((.(((........)))....))))))....))))) ( -15.89) >DroSim_CAF1 17957 96 + 1 -----------UACAUUAUCAAUAUAUUUCACACAAUUUCAAUAAUGGUUAUUUGUAAAUUUCGAUUUUUGGUGGCACCAACAACUGUAUCAACCAAAUCCAGAGAU -----------((((..((((.(((................))).))))....)))).(((((....((((((.(((........)))....))))))....))))) ( -12.19) >consensus ___________UACAUUAUCAAUAUAUUUCACACAAUUGCAAUAUUGGUUAUUUGUAAAUUUCGAUUUUUGGUGGCACCAACAACUGUAUCAACCAAAUCCAGAGAU ...........((((..((((((((................))))))))....)))).(((((....((((((.(((........)))....))))))....))))) (-15.04 = -15.16 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:28 2006