Locus 1864

Sequence ID 3R_DroMel_CAF1
Location 5,352,548 – 5,352,654
Length 106
Max. P 0.959874
window3066

overview

Window 6

Location 5,352,548 – 5,352,654
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 88.77
Mean single sequence MFE -25.73
Consensus MFE -21.42
Energy contribution -22.66
Covariance contribution 1.24
Combinations/Pair 1.11
Mean z-score -2.00
Structure conservation index 0.83
SVM decision value 1.51
SVM RNA-class probability 0.959874
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5352548 106 - 27905053
CGUUUGGAUCUAAACUGUUGGAAUGCGAAUUGAUAGAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCGAUCUGUGGAAAUCUUAAAGUUUGUCAAUUUCAUUCCG
.(((((....)))))....((((((.(((((((((((.......((((((.((.....((((.....)))).)).)))))).......))))))))))))))))). ( -29.04)
>DroSec_CAF1 11987 106 - 1
CGUUUGGAUCUAAACAGUUGGAAUGCGAACUGAUACAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCAAUCUGUGGAAAUCUUGAAGUUUGUCAAUUUCAUUCCG
.(((((....)))))....((((((.(((.(((((.((((((.(((((((.((...(((........)))..)).))))).)).))))))))))).))))))))). ( -26.90)
>DroSim_CAF1 11383 106 - 1
CGUUUGGAUCUAAACAGCUGGAAUGCGAACUGAUACAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCAAUCAGUGGAAAUCUUGAAGUUUGUCAAUUUCAUUCCG
.(((((....)))))....((((((.(((.(((((.((((((.(((((((.(....(((........)))...).))))).)).))))))))))).))))))))). ( -25.10)
>DroEre_CAF1 12022 106 - 1
CGUUUGGUAAUCAAUUGCUGGAUUGCGAAUUGAUACAAUUUUCAUUUCCCUCAAUCUUGUCAUUCUGCAAUCUGUGGAAAUGUUGAAGUUUGUCAAUUUAAUUCCG
......((((((........))))))(((((((((.(((((((((((((..((...((((......))))..)).)))))))..)))))))))))))))....... ( -23.90)
>DroYak_CAF1 13029 106 - 1
CGUUUGGAUAUCAAUUGCUGGAAUGCCAAUUGAUAUAAUUUCGAUUUUCCUCAAUUUUGUCAUGCUUCAAUCUGUGGAAAUGUUAAAGUUUGUCAAUUUCAUUCCG
...................((((((..((((((((.(((((..(((((((.((...(((........)))..)).))))).))..))))))))))))).)))))). ( -23.70)
>consensus
CGUUUGGAUCUAAACUGCUGGAAUGCGAAUUGAUACAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCAAUCUGUGGAAAUCUUGAAGUUUGUCAAUUUCAUUCCG
.(((((....)))))....((((((.(((((((((.((((((.(((((((.((...(((........)))..)).))))).)).))))))))))))))))))))). (-21.42 = -22.66 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:25 2006