| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,325,866 – 5,325,986 |
| Length | 120 |
| Max. P | 0.583114 |
| Location | 5,325,866 – 5,325,986 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.08 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.76 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5325866 120 + 27905053 UAGCGCAAAAAUGGGCGAAAAAAAAAUAAAGCGAACAAAAACACAAAUUUGGCCAGAGAGCAACAACGAAACUAAAUAAACAGCACACUUUUGUUUUGGCCUCUUUGGACGCGUUUUAAA ..((.((....)).))..........(((((((..((((........)))).(((((((((...(((((((.................)))))))...).))))))))...))))))).. ( -24.03) >DroSim_CAF1 31500 101 + 1 UAGCGCAAAAAUGGGCGAAA-------------------AACACAAACUUGGCCAGCGAGCAGCAACGAAACUAAAUAAACAGCACACUUUUCUUUUGGCCUCUUUGGACGCGUUUUAAA .(((((.......(......-------------------..).((((...(((((((.....))...((((..................))))...)))))..))))...)))))..... ( -16.67) >DroYak_CAF1 31050 103 + 1 CAGCGCCAAAAA---CCAAAAA--------------AAAAACACAAACUUGGCCAGAGAGCUACAACGAAACUAAAUAAACAGCACACUUUUGUUUUGGCCUCUUUGGACGCGUUUUAAA .(((((......---((((...--------------............))))(((((((((((.(((((((.................))))))).))).))))))))..)))))..... ( -22.99) >consensus UAGCGCAAAAAUGGGCGAAAAA______________AAAAACACAAACUUGGCCAGAGAGCAACAACGAAACUAAAUAAACAGCACACUUUUGUUUUGGCCUCUUUGGACGCGUUUUAAA .(((((...................................((......)).(((((((((...(((((((.................)))))))...).))))))))..)))))..... (-15.10 = -15.76 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:08 2006