| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,323,341 – 5,323,456 |
| Length | 115 |
| Max. P | 0.738027 |
| Location | 5,323,341 – 5,323,456 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.68 |
| Mean single sequence MFE | -46.83 |
| Consensus MFE | -42.35 |
| Energy contribution | -42.47 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5323341 115 + 27905053 ----UUACUA-ACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGUUUGGUGCCCACGAGAACCACGGGAACGUGGGCGGAGAAGUGACGGAUCUCCGGCCAC ----......-..........((((((....(((((((((.((.(((...((....))((.....))..))))).....(((((....))))).)))))))))...((....)))))))) ( -43.70) >DroSim_CAF1 29011 115 + 1 ----UUACUA-ACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGUUUGGUGCCCACCAGAACCACGGGAACAUGGGCGGAGAAGUGACGGAUCUCCGGCCAC ----......-..........((((((....(((((((((..((((....((....))))))((((((....)))))).(((.(....).))).)))))))))...((....)))))))) ( -39.70) >DroYak_CAF1 28483 120 + 1 GGGGUGAUGACACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGCUUGGUGCCCACCAGGACCACGGGAACGUGGGCGGAGAAGUGGCGGAUCUCCGGCCAC ...(((((.((((......)))).)))))..(((((((((((((((....((....))))))))((((....))))...(((((....))))).)))))))))(((((....)).))).. ( -57.10) >consensus ____UUACUA_ACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGUUUGGUGCCCACCAGAACCACGGGAACGUGGGCGGAGAAGUGACGGAUCUCCGGCCAC .....................((((((....(((((((((...((((...((.((((.....)))))).))))......(((((....))))).)))))))))...((....)))))))) (-42.35 = -42.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:06 2006