| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,317,338 – 5,317,428 |
| Length | 90 |
| Max. P | 0.536474 |
| Location | 5,317,338 – 5,317,428 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.40 |
| Mean single sequence MFE | -15.32 |
| Consensus MFE | -2.44 |
| Energy contribution | -3.32 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.16 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5317338 90 - 27905053 CCGAUGCUAUAAAACAUUUAUA-----------------------------AUUCUGCCUUGCUUUAAAUACUGCUUUCAUACGGAACACUCUUUCUACUUCAAUUAUUC-UUAAUCCAU ((((((.(((((.....)))))-----------------------------..........((..........))...))).))).........................-......... ( -4.30) >DroSec_CAF1 21640 90 - 1 CCGAUGUUAUAUAAUAUAUAUA-----------------------------AUUCUGCCUUGGAUUAAAGACUGCUUUUAUGCGGAGCACUCUUUCUACUUCAAUUAUUC-UUAAUCCAU ..((.((((((((...))))))-----------------------------)))).....(((((((((((.((((((.....)))))).))).................-)))))))). ( -15.42) >DroSim_CAF1 22902 91 - 1 GCGAUGUUAUAUAAUAUAUAUA-----------------------------AUUCUGCCUUGGAUUAAAGACUGCUUUUAUGCGGAGCACUCUUUCUACUUCAAUUAUUCCUUAAUCCAU (((..((((((((...))))))-----------------------------))..)))..(((((((((((.((((((.....)))))).)))..................)))))))). ( -18.46) >DroEre_CAF1 24135 107 - 1 CCAAAGUCAUAAAACAUUGUUAUA------------UCUAACAAUCUAUCCAUAUUGCCUUUAAUUGAAGGCUGGCUUUAUGCGGAACACUCUUUUUACUCCAAUUAUUC-CUAAUCCAU ..(((((((......(((((((..------------..)))))))...........((((((....)))))))))))))....(((.............)))........-......... ( -17.72) >DroYak_CAF1 22269 119 - 1 CGGAUGUUGUAAAACAUUUUUAUGGAUAUAUAACACUCUAUUCAUAUUUCAUUGCUGCCUUGAACUAAAGGCUGUCUUUAUGCGGAACACUCUCGCCACUUCAAUUAUUC-UUAAUCCAU .((((...((((((((....((((((((..........))))))))..........(((((......)))))))).)))))(((((....)).)))..............-...)))).. ( -20.70) >consensus CCGAUGUUAUAAAACAUUUAUA_____________________________AUUCUGCCUUGAAUUAAAGACUGCUUUUAUGCGGAACACUCUUUCUACUUCAAUUAUUC_UUAAUCCAU ..................................................................(((((.((((((.....)))))).)))))......................... ( -2.44 = -3.32 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:05 2006